Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1h16
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   0.51 
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.4  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 156 GKNFSRPWILQ 188
           GK FSRPW+LQ
Sbjct: 49  GKAFSRPWLLQ 59


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 87 EVHYLHFLVQVNRLEHFHA 31
          E HY H+L +  R+E  HA
Sbjct: 26 EFHYNHYLTRRRRIEIAHA 44


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 111 KLHPKYPIEPSA---YGKGKNFSRPWILQDGRTVPGIGSEMRENYQI 242
           KLHP   +   A    G G +    WI     T+PG  S +  NY++
Sbjct: 524 KLHPPADLVVYACNVVGSGLSHGN-WIYPASMTIPGSNSAVFTNYKL 569


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 203 NCSSIL*YPGSTEVLSLSI 147
           NC+ +  YP S +V++L +
Sbjct: 216 NCTYVALYPSSVQVIALGV 234


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +1

Query: 55  YLNQKMKIVNLESDHWKGLSST 120
           YL++K++  +L+ + ++G+SST
Sbjct: 298 YLDEKLERNDLDLEKYEGISST 319


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 239 LIIFPHFAANSRNCS-SIL*YPGSTEVLSLSISRWLYGIFRVEL 111
           L+++   A    +CS  +  +P   +   L +  W Y  F+V+L
Sbjct: 140 LVVWQPPAVYKSSCSIDVEFFPYDVQTCVLKLGSWTYDGFKVDL 183


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 374 RCQLHQR*VRASKFGSGCR 430
           R +LH R + A   GS CR
Sbjct: 425 RDELHPRELEAVNLGSACR 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,608
Number of Sequences: 438
Number of extensions: 4727
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)