Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1h13
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    55   6e-10
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.56 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   2.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.2  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 55.2 bits (127), Expect = 6e-10
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 5/166 (3%)
 Frame = +1

Query: 256 ETVLITGAGHGIGRELAIQLAELGATVICWDKDQRRNNAVVNEIRKKDGECYGFTIDVTA 435
           E  L+TGA  GIG+ L   L   G  VI       +   +V E++ K G+      D++ 
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSN 67

Query: 436 QDQVASLASRMRRQLSDVTMVISNAGLLTCAPITHLRPEGVMKIIEVNLLAHFWVIQAFL 615
           Q+ +  +   + + L  + ++I+NA +     + +       KI ++NLL    +IQ  L
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVL 127

Query: 616 PSMVDR--RYGHIVAINSSAG--LMPCADMIP-YCAAKFGLRXLMD 738
             M  +    G IV IN ++G  L+P     P Y A+K  L  L D
Sbjct: 128 KLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTD 173


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 332 VAPSSANCIASSRPMPWPAPVMSTVSPCKLLKAGGTSTLKAATV 201
           V P   +C+ S  P+  P   +      K +   GT+TL+  T+
Sbjct: 422 VGPKVKDCLISWNPLMQPKQPIKLFEQWKSILESGTTTLQTRTM 465


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 524 HVRSPALLITIVTSLSCRLIR 462
           HV+S  LLITIVT ++ + ++
Sbjct: 2   HVKSVLLLITIVTFVALKPVK 22


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 499 ISNAGLLTCAPITHLRPEGVMKIIEVNL 582
           +   G+LT   + HL+  GV K IE  L
Sbjct: 21  VCGLGILTLGVLIHLQILGVSKQIETGL 48


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 475 QLSDVTMVISNAGLLTCAPITHLRP 549
           ++  V  ++ N+G + C P T   P
Sbjct: 133 EMPSVECIVFNSGTILCVPFTTYTP 157


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = -3

Query: 293 PMPWPAPVMSTVSPCKLLKAGGTSTLKAATVQLENSLTNKTRVSSAHKGAEASPPL 126
           P+     VMS  S CK  K    S  +    +   +   K   SSA K  +A+  L
Sbjct: 566 PLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSAKKERKATKTL 621


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 151 KVPKRAPHYPTTAISTPPAKP*T 83
           +VP+     P+ ++S+PP +P T
Sbjct: 122 EVPESRDGPPSVSLSSPPREPGT 144


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 11  IIYRNLHLCIGEIYWCVL 64
           + +RN   CIG I W  L
Sbjct: 118 LAWRNATRCIGRIQWSKL 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,006
Number of Sequences: 438
Number of extensions: 4687
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)