Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1h11
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...   138   1e-33
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    39   8e-04
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    38   0.001
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    33   0.041
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    32   0.072
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    32   0.072
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    26   4.7  

>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score =  138 bits (333), Expect = 1e-33
 Identities = 74/170 (43%), Positives = 102/170 (60%), Gaps = 22/170 (12%)
 Frame = +1

Query: 187 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEA-------------------PADAG--- 300
           LP  W ++ SRS    Y+ NT T +S WE P A                   P +A    
Sbjct: 6   LPKPWIVKISRSRNRPYFFNTETHESLWEPPAATDMAALKKFIANELQESVTPTEASNSP 65

Query: 301 EVRCSHILVKHAESRRPTSWREEKITRTKEEALELIKGYRKQIVANDAQFDEIALKYSDC 480
           ++R SH+LVKH ESRRP+SW+EE ITR+KEEA +L + Y + + +      ++A+K SDC
Sbjct: 66  KIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDC 125

Query: 481 SSAKRGGDLGMFGKGQTQLAFEEESFKLKIGQLSKPIETESGLHIILRTA 630
           SSA+RGG+LG FG+ + Q  FE+ +F LK G++S  +ET SG HII R A
Sbjct: 126 SSARRGGELGEFGRDEMQKPFEDAAFALKPGEISGVVETSSGFHIIQRHA 175


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 184 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPA 291
           PLP GWEMR + +T   Y+++  TK + W+ P  P+
Sbjct: 346 PLPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPS 380



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +1

Query: 187 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPADAG 300
           LP GWE RT  + G TYY++  T+ + W RP   + AG
Sbjct: 207 LPPGWERRTD-NLGRTYYVDHNTRSTTWIRPNLSSVAG 243


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 184 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPA 291
           PLP GWEMR + S    Y+++  TK + W+ P  P+
Sbjct: 365 PLPSGWEMRLTNS-ARVYFVDHNTKTTTWDDPRLPS 399



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +1

Query: 124 RNLHLPA*ILNIRMSNENEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAP 288
           +N HLP       M +++   LP GWEMR +  TG  Y+++  T+ + W  P  P
Sbjct: 287 QNRHLPDDSNPSLMQSDSGNDLPFGWEMRYT-DTGRPYFVDHNTRTTTWVDPRNP 340



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 187 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 279
           LP GWE R   S G TYY++  T+ + W RP
Sbjct: 238 LPPGWERRAD-SLGRTYYVDHNTRTTTWTRP 267


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 184 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 279
           PLP GW    + S G+ YY N   KKS ++RP
Sbjct: 4   PLPPGWTEHKAPS-GIPYYWNAELKKSTYQRP 34


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 184 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 279
           PLP GWEMR S    + Y+++  TK + W  P
Sbjct: 243 PLPAGWEMRLSEDYHV-YFVDHSTKTTTWSDP 273


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +1

Query: 193 DGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPADAGEVRCSHILVK-HAESRRPTSWREE 369
           D  E++T  S    YY N+ T+KS WE+PE   +  E + S +  K +A +     W   
Sbjct: 35  DWHEVKTEDSR--VYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYN- 91

Query: 370 KITRTKEEALELIKGYRKQIVANDAQ 447
               T+E   ++   Y+  +V    Q
Sbjct: 92  --VNTRESVWDIPDEYKAALVDEPEQ 115


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 688 SIVFYIFLFSLSKYKMNKT 632
           +IVFYIF +  S Y+ N T
Sbjct: 14  AIVFYIFTYGFSTYRKNDT 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,203
Number of Sequences: 5004
Number of extensions: 52897
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)