Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1h07
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    36   0.006
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    30   0.32 
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    29   0.56 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   1.7  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   3.0  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    26   6.9  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   6.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   6.9  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.1  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 636 DGWHIGQMKAEAQNLARYLQEMPANMLNPTSFAKIAVEL 752
           + + +G ++A AQNLAR L E PAN +    F   A EL
Sbjct: 182 NAFKVGLIEAAAQNLARSLMECPANYMTSLQFCHFAQEL 220


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 108 TDCVPYGTPRKIKDPKLCGHKDKGLVLGVYYNENAK 215
           T C   G  R IK+   C HK KG V+ + Y+E  K
Sbjct: 274 TSCKIPGVKRIIKEMSNCVHKQKGNVIWLNYDEPTK 309


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 717 SAYLRAFLEDTLLNFELQPSFDLYANHLYHN 625
           S  L   + D+L  F L+P F  Y  H+Y N
Sbjct: 4   SLLLSVNISDSLFTFSLKPLFSQYRKHIYFN 34


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 394 VKHSDPRPDTATNANVGSKSKNILDSPNFGMGDNFNIFQSLPPDSLSYFC 245
           +K S PR    TN  +   + N+LD+ +F + D  +   ++    L YFC
Sbjct: 660 IKISQPRNSLQTNGYIEGMANNVLDA-SFNVEDESH---AISDSELGYFC 705


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 303 IPKLGESRIFFDLDPTFAFVAVSGLGSECLTYNVS 407
           + KLGE    F L P F+ + + G    CL Y ++
Sbjct: 868 LTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYVIA 902


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 711 YLRAFLEDTLLNFELQPSFDLYANHLYH 628
           Y+      TLLN +++   D +A H YH
Sbjct: 191 YVENISRPTLLNKDVREWLDTFAQHFYH 218


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 678 NFELQPSFDLYANHLYHNRREDKFGI*GEFSFPTYFY 568
           +F L P+F LY   ++H RR     I       T FY
Sbjct: 566 SFRLLPNFTLYPQFIFHLRRSPFLHIFNNSPDETSFY 602


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 609 IYLHDDCDIDGWHIGQMKAEAQNLAR 686
           +Y+  DCD +G HIG    E  N+AR
Sbjct: 112 LYIWTDCDREGEHIG---VEISNVAR 134


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 334 KNILDSPNFGMGDNFNIFQSLPPDSLS 254
           + I+ SP+  +GD++NI    PP S++
Sbjct: 385 ETIIKSPSSFIGDSYNIANIDPPSSMN 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,179
Number of Sequences: 5004
Number of extensions: 75084
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)