Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1h03
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    29   0.51 
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    29   0.51 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    29   0.68 
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    29   0.89 
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    28   1.6  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    27   2.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   2.7  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    27   2.7  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   3.6  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    27   3.6  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   4.8  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    26   6.3  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   6.3  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   8.3  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   8.3  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   8.3  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   8.3  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -1

Query: 300 SIASLCGRFLRLHDTYYRFICTWRYGWILYFFDTNCNAGGWWW 172
           S+ S C  F   HD      C W    + YFF     +  W+W
Sbjct: 244 SVLSSCALFKIFHDNDNTKACNWTISRLRYFFIVFVASFIWYW 286


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -3

Query: 721 VISLVLCLSAFFDKTSMSSFNCFIKVSNSFRCLSKFFEDSICCSTVDSTLNVLVLAHSPN 542
           +++L  C +   D  + S+ N   K    F CL   + +S   ST+   +  L++A+  N
Sbjct: 553 LMTLTYCATLTKDDANKSN-NFITKARLGFHCLQMIYRESTYYSTIMEAIKNLLIAYDMN 611

Query: 541 S 539
           S
Sbjct: 612 S 612


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 19/108 (17%), Positives = 49/108 (45%)
 Frame = +3

Query: 384 RPLRRTAEETENRRVQKTKATVLRVTMDRILKTVINNKIDSMIEKVRDKFCQEFGECANT 563
           +P R++ ++++NR+ + + AT      + I  ++ ++    ++ ++R             
Sbjct: 402 KPFRKSRKQSKNRKNKSSVATQFSEESEDIADSITSSTFFPVLPQIRPSTPLNL----KL 457

Query: 564 RTLSVESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLSKNADKQS 707
           R   + S+ +     +K FD+ L   E L+   K    +L+ + + +S
Sbjct: 458 RNFIISSSEDSTSPKAKEFDRPLPSTEFLVAINKSQEALLNNSPNSKS 505


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 570 LSVESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVL 683
           LSV+ST+E+     K  D  +N    + ++ KD++ +L
Sbjct: 290 LSVDSTIEKNASEQKKDDNSVNPFTKIEEKKKDEVTLL 327


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
 Frame = +3

Query: 405 EETENRRVQKTKATVLRVTMDRILKTVINNKIDSMI--EKVRDKFC----QEFGECANTR 566
           EET+  +  + K         + LKT++ +K++ ++   K+    C     ++G  AN  
Sbjct: 527 EETDEEKAAREKLEKEYEEFAKQLKTILGDKVEKVVVSNKIVGSPCLLTTGQYGWSANME 586

Query: 567 TLSV-----ESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTKEITT 725
            +       ++++   + S K F+  +N    +I +LK  +E     A+ +S K++ T
Sbjct: 587 RIMKAQALRDTSMSAYMSSRKTFE--INPKSPIIAELKKKVE--ENGAEDRSVKDLAT 640


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 138 DTSFFLLFYSLQGARVWWRWLRY-WFDI 58
           +TSFFL  +  +  R WWR+L Y W+++
Sbjct: 63  NTSFFL--HPFKKIRFWWRYLFYGWWNL 88


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 78  ATSTKPLHLATNKTKGKSWYQNMSKDSCRTTATTSPLRCNLYRKNKESTRTSK 236
           A  +KP+  A   +K  SW  +  + + +T  TTS LR  +     ++ R  K
Sbjct: 182 ANISKPVVQAQKDSKDNSWDDSSKQSNTQTANTTSNLRVPVNASWSDAGRKEK 234


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +3

Query: 570 LSVESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLS--KNADKQSTKEI 719
           LS EST  Q+++S  N DK  N++ETL +++    + LS  ++ +K    E+
Sbjct: 808 LSEESTRLQELQSQLNQDK--NQIETLNERISAAADELSSMESINKNQANEL 857


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/70 (24%), Positives = 39/70 (55%)
 Frame = -3

Query: 652 IKVSNSFRCLSKFFEDSICCSTVDSTLNVLVLAHSPNS*QNLSLTFSIIESILLLITVFS 473
           + +S+S    S++   SI  +TV S+ + +     P+S Q +S + S  +++++  ++ S
Sbjct: 78  LSISSSSSTSSEYSSSSIPITTVSSSDSFI-----PSSSQTISASSSTTDNVIVSSSISS 132

Query: 472 ILSMVTLSTV 443
            +S   +ST+
Sbjct: 133 TVSSTPVSTI 142


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 591 EQQIESSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTKE 716
           + Q+E+ +N  KH   L  + +++K   +   KNA+     E
Sbjct: 282 QNQLENHENSKKHKKNLRKMNQEIKKHAKEAQKNAESNKQPE 323


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 579 ESTVEQQIESSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTKEI 719
           ESTV +Q +   N +K L +L   + + ++      KN D+Q ++++
Sbjct: 14  ESTVAEQRKGQSNEEKPLIDLNDSLDEQRNAYNEHCKNHDQQPSQQV 60


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 573 SVESTVEQQIE--SSKNFDKHLNELETLIKQLKDDIEVLSKNADKQST 710
           ++E+ ++Q +E   ++     +++LET I +    + VL +NA   ST
Sbjct: 804 AIEAQMKQDMEIARARTIKTRIDQLETSITEFNKKLMVLQRNAKNLST 851


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = +3

Query: 474 LKTVINNKIDSMIEKVRDKFCQEFGECANTRTLSVESTVEQQIESSKNFDKHLNELETLI 653
           LK  ++N +++ I+KV D    +  E +     S +  + + +   +   K+  +L   I
Sbjct: 10  LKKAMSN-VETSIDKVLDG--NQIEEMSRGNAKSKDEIIAKLLTEGQALSKNELKLNNTI 66

Query: 654 KQLKDDI---EVLSKNAD-KQSTKEI 719
           KQLK  +   E   K  D KQ+T E+
Sbjct: 67  KQLKKSLSEAETKLKRLDEKQATPEL 92


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
 Frame = +3

Query: 396 RTAEETENRRVQKTKATVLRVTMDRIL-----KTVINNKIDSMIEKVRDKFCQEFGECAN 560
           +TA ET+ +R   T+  +  +  D+ L     K  +NN  + +   V  K     G    
Sbjct: 441 QTAIETDIQRYSPTEEDLNPIADDKSLLFDLEKLRLNNDEEKLDPDVPQKLAMAQGWYPV 500

Query: 561 TRTLSVESTVEQQIESSKNFDKHLNEL-ETLIKQLKDDIEVLSKNADKQ 704
            +   +  +   ++ +S+ FD+   EL  + I+ L D     S+N DKQ
Sbjct: 501 VQKSLIILSKIYRLVNSQVFDEIALELVHSCIRSLVDAYRYFSRNNDKQ 549


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 130 LFPFVLFVARCKGLVEVAQVLVRHC 56
           ++P     A+  GL E AQ ++ HC
Sbjct: 761 MYPIAYLTAKSNGLEEKAQQILSHC 785


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 606 SSKNFDKHLNELETLIKQLKDDIEVLSKNADKQSTK 713
           S  N   HL E     +  + DIE L     +Q+TK
Sbjct: 700 SQSNIPPHLQEHRQSQQHFQQDIEALQSQQQQQATK 735


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 5/21 (23%), Positives = 13/21 (61%)
 Frame = -1

Query: 222 WILYFFDTNCNAGGWWWRLFY 160
           W+L+++   C + GW++   +
Sbjct: 528 WVLFYYYRGCQSWGWYYNYHF 548


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -1

Query: 183 GWWWR--LFYRNPWTYFDTSFFLLFYSLQ-GARVWWRWLRYWF 64
           GW+W   +++ + W          F S    A +WW ++  WF
Sbjct: 68  GWFWTSLVYFYHAWDQKRNKIDFKFISRYIVATLWWMFVTQWF 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,479
Number of Sequences: 5004
Number of extensions: 57449
Number of successful extensions: 237
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)