Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1g22
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...   121   9e-29
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...   101   1e-22
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    30   0.37 
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    26   4.5  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   6.0  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    25   7.9  

>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score =  121 bits (292), Expect = 9e-29
 Identities = 75/179 (41%), Positives = 101/179 (56%), Gaps = 15/179 (8%)
 Frame = +3

Query: 204 RERLEIAKQILEEV----PLIDGHNDLPWNIRKFLRN--QVNDFELDTDLTVVEPWSISK 365
           RE  E+A+Q  +E+     ++D HND P+ +R  LRN  Q+ +F+ +  LT         
Sbjct: 6   REEKELAQQRFKEICKHAKIVDTHNDFPYLLRVQLRNKLQLAEFDFENGLT--------- 56

Query: 366 YSHTDLPRLREGMVGAQFWSAFVPCGTQN---------RDAVQLTLEQIDVIKRLVEKYP 518
            SHTDL ++R+G VG QF+S F+ C   N            V+ TLEQIDV +RLV KY 
Sbjct: 57  -SHTDLVKMRQGQVGVQFFSCFIECKNPNYLYQDFDTPTTVVRDTLEQIDVTRRLVCKYN 115

Query: 519 QQLQFATSVTDILQSHGARPRKIASLIGIEGGHSIANSLAVLRSYYQLGVRYMTLTHTC 695
             L+F     D + +      KIA  +G+EG H +  SLAVLR YY LGVRY+TLTH C
Sbjct: 116 NDLKFVDCADDAIAAF-RNNGKIAIALGVEGLHQVDTSLAVLRQYYSLGVRYITLTHNC 173


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  101 bits (241), Expect = 1e-22
 Identities = 68/171 (39%), Positives = 91/171 (53%), Gaps = 16/171 (9%)
 Frame = +3

Query: 231 ILEEVPLIDGHNDLPWNIRKFLRNQVNDFELDTDLTVVEPWSISKYSHTDLPRLREGMVG 410
           +L   PLIDGHNDLP  +R+   N++ +  L+                TD+ RLR+G VG
Sbjct: 57  VLTHFPLIDGHNDLPIYLRENYDNRLLNISLE-----------HLPGQTDIFRLRQGHVG 105

Query: 411 AQFWSAFVPCGTQ--------NR----DAVQLTLEQIDVIKRLVEKYPQQLQFATSVT-- 548
            QFWS FV C +         NR    +AV  TL+QIDV+KR+   YP+           
Sbjct: 106 GQFWSVFVECPSLDSNSSLSWNRTGEYEAVTQTLQQIDVVKRMALYYPKTFSLTDHSGKV 165

Query: 549 --DILQSHGARPRKIASLIGIEGGHSIANSLAVLRSYYQLGVRYMTLTHTC 695
             D L++H      I+S++GIEG H IA S ++LR +Y LGVRY TL H C
Sbjct: 166 KFDFLRNH------ISSMMGIEGLHQIAGSPSILRQFYDLGVRYATLAHNC 210


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 276 WNIRKFLRNQVNDFELDTDLTVVEPWSISKYSHTDLPRLREGM 404
           W +   L + + D  ++   +VVE W  S  +H DL +L  G+
Sbjct: 171 WLMNSLLLDGLRDLLVEKQPSVVEAWVCSSQTHEDLLKLLNGL 213


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 507 EKYPQQLQFATSVTDILQSHGARPRKIASLIGIEGGHSIANS 632
           E YPQ  +     +D L+S   +P K     G+ GG +I  +
Sbjct: 327 ESYPQYAKTLRLTSDQLRSLNLKPGKNELSFGVNGGKAICTA 368


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 629 VRDRVTSFDANQGCYLTWASTVRLQDISYG 540
           V D   SFD++     +W  T+RL D+  G
Sbjct: 66  VSDCALSFDSHYALSASWDKTIRLWDLEKG 95


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -1

Query: 477 PESAGRRLCFGYRTARTPTRIELPPCPLAVSEDQCGSTWR*TRAPPRSGLCPVRSRSLDS 298
           P S  ++L    ++  T ++   PP  ++ +    GS+     A P +G    R RSL S
Sbjct: 161 PLSTNKKLII--QSNNTSSQHSTPPLSISDTSTHTGSSTDNVEANPNTGFSSARKRSLRS 218

Query: 297 EGI 289
             +
Sbjct: 219 SNL 221


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 533 ELQLLRVFFDKSLDDVNLLQSQLDGVSVLGTA-RHERRPELSSHHALSQSRKIS 375
           E++LLR    KS DDV L++     +S LG A R E   +     A    +K S
Sbjct: 264 EVELLRFMVGKSSDDVELMKESA-RLSNLGAASRKEHLNKFEKKEAKKDRKKKS 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,098
Number of Sequences: 5004
Number of extensions: 58780
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)