Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1g18
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   3.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   5.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.4  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = -2

Query: 551 GSFDLKD----IFFECRLKPSLLLDANSIF 474
           G+ D++D    ++ EC LK   +LD N++F
Sbjct: 50  GNIDVEDKKVQLYCECILKNFNILDKNNVF 79


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 249 RYIRQKNRRT*ARSFGKN-RQRN**SENISTIDFRKIQQNRFQNRLNARNTRQGYGSSQR 425
           R  R+   R+  RS  +  R+R+   + IS++  + I  N   N  N  N    Y ++  
Sbjct: 287 REYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNY 346

Query: 426 FAHSRIY 446
             + ++Y
Sbjct: 347 NNYKKLY 353


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 232 CCDPYWSIVSDISEYGMYSRPYGIPE 155
           C   +WS  +    +   S+PY  PE
Sbjct: 201 CTTXWWSXXTVAXTFKYSSKPYXFPE 226


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 229 NKQNTDEDTY-DRKIEELKLEVSEKIDK 309
           NK +  +  Y + + EE+K EVS  I K
Sbjct: 153 NKMDMTDPPYSEARFEEIKKEVSSYIKK 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,923
Number of Sequences: 438
Number of extensions: 3862
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)