Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1g17
         (706 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK001908-1|BAA91973.1|  684|Homo sapiens protein ( Homo sapiens ...   151   2e-36
BC020955-1|AAH20955.1|  547|Homo sapiens TBC1D23 protein protein.      53   9e-07
AK001750-1|BAA91881.1|  532|Homo sapiens protein ( Homo sapiens ...    53   9e-07
AF460821-1|AAM88192.1|   64|Homo sapiens immunoglobulin heavy ch...    30   9.3  

>AK001908-1|BAA91973.1|  684|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11046 fis, clone PLACE1004473. ).
          Length = 684

 Score =  151 bits (367), Expect = 2e-36
 Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 1/173 (0%)
 Frame = +2

Query: 191 DTWLIELESAL-LDGCTAQEINALTKGKKIPVSLRPDVWLLCLNCQDAGNQLLLFDEIFD 367
           D W  +LE AL   GC  + +  + +G+ +P  LR  VW + LN    G+ L  +D I D
Sbjct: 16  DGWEKDLEEALEAGGCDLETLRNIIQGRPLPADLRAKVWKIALNVAGKGDCLASWDGILD 75

Query: 368 LPNQNELRDDVKKFVEKLGNEEDDKLAVISDVESIITFYCKSKNTTYTSNNGWIDIXXXX 547
           LP QN +  D  +F+++L   E+    ++ D+ES+ITFYCKS+N  Y+++  WI +    
Sbjct: 76  LPEQNTIHKDCLQFIDQLSVPEEKAAELLLDIESVITFYCKSRNIKYSTSLSWIHLLKPL 135

Query: 548 XXXXXXRSDTYNLFERILKLYTPKGCSKNGVPCHILRLILXYHDPELCSFLDT 706
                 RSD YN F  I+  Y P+ CS+ G P H  RL++ YH+PELCS+LDT
Sbjct: 136 VHLQLPRSDLYNCFYAIMNKYIPRDCSQKGRPFHPFRLLIQYHEPELCSYLDT 188


>BC020955-1|AAH20955.1|  547|Homo sapiens TBC1D23 protein protein.
          Length = 547

 Score = 53.2 bits (122), Expect = 9e-07
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 608 YTPKGCSKNGVPCHILRLILXYHDPELCSFLDT 706
           Y P+ CS+ G P H+ RL++ YH+PELCS+LDT
Sbjct: 4   YIPRDCSQKGRPFHLFRLLIQYHEPELCSYLDT 36


>AK001750-1|BAA91881.1|  532|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10888 fis, clone NT2RP4002052. ).
          Length = 532

 Score = 53.2 bits (122), Expect = 9e-07
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 608 YTPKGCSKNGVPCHILRLILXYHDPELCSFLDT 706
           Y P+ CS+ G P H+ RL++ YH+PELCS+LDT
Sbjct: 4   YIPRDCSQKGRPFHLFRLLIQYHEPELCSYLDT 36


>AF460821-1|AAM88192.1|   64|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 64

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 386 LRDDVKKFVEKLGNEEDDKLAVISDVESIITFYCKSKNTTYTSNNGWID 532
           L+  V   V+   N+   KL+ ++  ++ + +YC   +T Y+S+ GW D
Sbjct: 14  LKSRVTISVDTSKNQFSLKLSSVTAADTAV-YYCARGDTMYSSSRGWFD 61


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,008,185
Number of Sequences: 237096
Number of extensions: 1742904
Number of successful extensions: 7016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7016
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)