Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1g13
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673...   119   3e-27
05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382           62   5e-10
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139...    59   4e-09
10_01_0316 + 3479574-3482679,3482766-3483127                           29   5.4  
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666...    28   9.4  

>12_02_0360 -
           17966857-17966865,17966866-17966954,17967276-17967399,
           17967639-17967717,17968267-17968352,17968471-17968661,
           17970496-17970560,17971192-17971282,17971705-17971801,
           17971883-17972128,17972248-17972505
          Length = 444

 Score =  119 bits (286), Expect = 3e-27
 Identities = 72/180 (40%), Positives = 105/180 (58%), Gaps = 6/180 (3%)
 Frame = +1

Query: 247 LRNGGIIPDVAQDLHRKYIEPTVTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAK 426
           +R GG+ P +A++ H   I+  V + L  AN+   D+SA+AVTV PGL L L VG+  A+
Sbjct: 148 VRWGGVAPKMAEEAHSLAIDQVVQKALDDANVSENDLSAVAVTVGPGLSLCLRVGVHKAR 207

Query: 427 HLARVNAKPIIPIHHMEAHALT-----VRM-EHNVNFPYLVLLISGGHCLLAVVQNINKF 588
            +A+    PI+ +HHMEAHAL      VR+   +++FP+L LLISGGH LL +   + ++
Sbjct: 208 KIAKSFRLPIVGVHHMEAHALVSSSIDVRLVNKDLDFPFLALLISGGHNLLVLAHGLGQY 267

Query: 589 LLLGKSIDMAPGELFDKIARRMKLRNVPELSTMCGGQAVETAALRATNPEMFNLPIPLVQ 768
           + LG +ID A GE +DK AR + L          GG A+E  AL   +P      +P+ Q
Sbjct: 268 VQLGTTIDDAIGEAYDKSARWLGLD-----MRKGGGPALEQLALEG-DPNAVKFSVPMRQ 321



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 94  TFQKLRPLTNSKCNSTLIF-GIETSCDDT 177
           TF+ L  + ++   + L+  GIETSCDDT
Sbjct: 54  TFRSLATMPSAAAAADLLMLGIETSCDDT 82


>05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382
          Length = 441

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 37/138 (26%), Positives = 69/138 (50%)
 Frame = +1

Query: 259 GIIPDVAQDLHRKYIEPTVTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAKHLAR 438
           G +P      H  ++ P +   L +A +   D++ +  T  PG+   L V    A+ L+ 
Sbjct: 113 GFLPRETAHHHLAHLLPLLRAALGEAGVTPADLACVCYTKGPGMGAPLQVAAAAARALSL 172

Query: 439 VNAKPIIPIHHMEAHALTVRMEHNVNFPYLVLLISGGHCLLAVVQNINKFLLLGKSIDMA 618
           +  KP++ ++H  AH    R       P +VL +SGG+  + +  +  ++ + G++ID+A
Sbjct: 173 LWGKPLVGVNHCVAHVEMGRAVTGAVDP-VVLYVSGGNTQV-IAYSEGRYRIFGETIDIA 230

Query: 619 PGELFDKIARRMKLRNVP 672
            G   D+ AR ++L N P
Sbjct: 231 VGNCLDRFARVLELSNDP 248


>01_02_0069 -
           10813467-10813475,10813476-10813564,10813865-10813988,
           10814227-10814305,10815298-10815388,10815808-10815904,
           10816197-10816241,10816369-10816464
          Length = 209

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 30/67 (44%), Positives = 42/67 (62%)
 Frame = +1

Query: 313 VTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAKHLARVNAKPIIPIHHMEAHALT 492
           V + L  AN+   D+SA+AVTV PGL L L VG+  A+ +A+    PI+ +HHMEA AL 
Sbjct: 49  VQKALDNANVSESDLSAVAVTVGPGLSLCLRVGVHKARKIAKSFHLPIVGVHHMEAQALV 108

Query: 493 VRMEHNV 513
            R   ++
Sbjct: 109 SRSTDDI 115


>10_01_0316 + 3479574-3482679,3482766-3483127
          Length = 1155

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
 Frame = -2

Query: 731 LVALNAAVSTACPPHIVESSGTFLSFILLAILSNSSPGAMSILLPRRRNLFIFWTTANKQ 552
           L+    A S   PP    S+ T  + +LL+ L +  P +  +LLP  R      ++ N  
Sbjct: 15  LLLFPLATSAQPPPPSNTSASTSAAAVLLSFLDSLPPASQRLLLPSWRQSRSSSSSGNAT 74

Query: 551 *PPEMSNTKYGKLTLCSILTVNACASIW*IGIIGLALTRAKCL----AYFMPTARLNGKP 384
            PP   +  +  +T CS     A  ++  +G+ G     A  L    A  +P   L+G  
Sbjct: 75  APP--PHCAFLGVT-CSDTGAVAALNLSGVGLTGALSASAPRLCALPASALPVLDLSGN- 130

Query: 383 GFT 375
           GFT
Sbjct: 131 GFT 133


>12_02_0542 -
           20166044-20166111,20166399-20166526,20166613-20166686,
           20166934-20166995,20167903-20168098,20168106-20169086
          Length = 502

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 525 IWEINIVFHSDCQCMCFHMVNRNYRF 448
           + EI++V+ S+  C+C + V R Y F
Sbjct: 86  VMEISLVYSSEHNCLCIYGVVRRYYF 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,175,745
Number of Sequences: 37544
Number of extensions: 394447
Number of successful extensions: 821
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)