Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1g11
         (147 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   1.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   2.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    23   4.1  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    23   5.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    22   9.6  

>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 2   NDVNFLVQP*VDVIVNLFYSLFVNVSNVIKANFTVN 109
           N VN  V P  DV+V+    +F   SNV+  +  +N
Sbjct: 408 NFVNVEVLPLADVVVSSLTKIFSGDSNVMGGSMVLN 443


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 50  LFYSLFVNVSNVIKANFTVNF 112
           LF+++F N   + + NFT++F
Sbjct: 333 LFFTIFTNAYKLRQTNFTLDF 353


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 88  DYIRYIDK*RIKQIDNDV 35
           D +  ID  R+KQID DV
Sbjct: 882 DVVAVIDSGRVKQIDYDV 899


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -3

Query: 109 INSKICFDYIRYIDK 65
           +N+++CF+ I+YI +
Sbjct: 39  LNNQVCFEAIKYIQR 53


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 89  KANFTVNFSLLKPYI 133
           ++  TVN+SL++P+I
Sbjct: 385 RSRITVNWSLIRPFI 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 458,949
Number of Sequences: 5004
Number of extensions: 5087
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 29
effective length of database: 2,217,362
effective search space used: 42129878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)