Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1g11
         (147 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    26   3.2  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      26   3.2  

>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 44   VNLF-YSLFVNVSNVIKANFTVNFSLLKPYIQ 136
            +N++ Y LF+ +++    NF  + S L+ Y++
Sbjct: 1803 LNIYDYDLFIVIASCFNGNFVTDLSFLREYLE 1834


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 44   VNLF-YSLFVNVSNVIKANFTVNFSLLKPYIQ 136
            +N++ Y LF+ +++    NF  + S L+ Y++
Sbjct: 1809 LNIYDYDLFIVIASCFNGNFVTDLSFLREYLE 1840


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 44   VNLF-YSLFVNVSNVIKANFTVNFSLLKPYIQ 136
            +N++ Y LF+ +++    NF  + S L+ Y++
Sbjct: 1809 LNIYDYDLFIVIASCFNGNFVTDLSFLREYLE 1840


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 44   VNLF-YSLFVNVSNVIKANFTVNFSLLKPYIQ 136
            +N++ Y LF+ +++    NF  + S L+ Y++
Sbjct: 1809 LNIYDYDLFIVIASCFNGNFVTDLSFLREYLE 1840


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,611
Number of Sequences: 27780
Number of extensions: 26364
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 12,740,198
effective HSP length: 29
effective length of database: 11,934,578
effective search space used: 226756982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)