Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1g07
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    59   7e-10
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   1.9  
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    27   2.6  
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    26   4.5  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   7.8  
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    25   7.8  

>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 58.8 bits (136), Expect = 7e-10
 Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = +3

Query: 321 WVIERVVSAALVP--LIPLALMMPNKLFDSLLAILITAHSFWGMEAMVVEYIRVLLFGHV 494
           W  ER+++ A+VP  +IPL     + L D+ LA  +  H+  G E+ V++Y     F  +
Sbjct: 88  WDFERIIAIAMVPQVMIPLFTGTSHPLMDAALACTLITHAHLGFESCVIDYFPARRFKKL 147

Query: 495 IPKIMMLLVYFLTATMLGGLFYLNFNDIGVSRAFWRIWKN 614
            P +M  ++   T   L G++  N NDIG++    ++WK+
Sbjct: 148 SP-LMHWILRGCTVLTLIGVYEFNTNDIGLTEGIKKLWKS 186


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 360 LIPLALMMPNKLFDSLLAILITAHSFWGMEAMVVEYIRVLLFGH 491
           LI   L    K  + LL I  +  SF G     +EY++VLL  H
Sbjct: 448 LIRETLSAQAKFVEKLLRISKSVQSFRGTRLKKIEYLKVLLEDH 491


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 68  YHTINNHGVLHVSSYIRMPKSNVHSTSYEASDPAS 172
           Y+T+ N GV ++  Y+ +P   V +T      PA+
Sbjct: 65  YYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAA 99


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 243 ILNAIRSFRTSCVRRSAEKVEDHSRL 320
           +LNA  S RT+C RR  + +E H+ +
Sbjct: 5   VLNAQVSIRTACCRRWIDCIECHNEI 30


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 369 LALMMPNKLFDSLLAILITAHSFWGMEAMVVEYIRVLLFGHVIPK 503
           + L++ N + +  L I+  +    G  A+++    +++FG VIP+
Sbjct: 125 VTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQ 169


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 68  YHTINNHGVLHVSSYIRMPKSNVHST 145
           Y+T+ N GV ++  Y+ +P   V +T
Sbjct: 65  YYTLTNEGVEYLREYLHLPAEVVPAT 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,326
Number of Sequences: 5004
Number of extensions: 59196
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)