Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1g07
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0975 - 21370715-21370877,21371227-21371319,21371383-213714...    31   0.66 
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           28   6.2  
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241...    28   8.1  

>04_03_0975 -
           21370715-21370877,21371227-21371319,21371383-21371466,
           21371745-21371869,21372360-21372600,21373640-21373734
          Length = 266

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
 Frame = +3

Query: 318 LWVIERVVSAALVPLIPLALMMPN-KLFDSLLAILITAHSFWGMEAMVVEYIRVLLF--G 488
           +W +  + S++   L  LA   P   L    L +    H+ WG  ++  EYIR+++    
Sbjct: 142 IWYVTSL-SSSFTRLYLLAFFAPGFVLLKYYLRVSSGTHAIWGDPSIAYEYIRMIVATRK 200

Query: 489 HVIPKIMMLLVYFLTATMLGGLFYLNFNDIGVSRAFWRIWKNMKSKN 629
           HV+      L+  L +  LG + Y        SR   +I+   +++N
Sbjct: 201 HVLALRQQALILRLMSRNLGIISYSELFPFLTSRREQKIYLVTEARN 247


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 359 WDQCSRNHSLNDPEPGVVLDLLR*PAHARR 270
           W + S NH   D   G+VL LL  P+HAR+
Sbjct: 338 WIEQSENHRKGD-HAGIVLVLLNHPSHARQ 366


>10_08_0765 - 20421813-20423174,20423591-20423771,20423862-20424117,
            20424768-20425095,20425218-20426156,20427015-20427761,
            20428517-20428789
          Length = 1361

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +2

Query: 365  SVSPHDAEQTIRLSPGDTDHRSQFLGHGSYGSGVHPRPTLRSRDTED 505
            S SP      IR    D  H      HG YG+  H  P ++  D  +
Sbjct: 1178 SDSPQQVNAKIRSESADRPHLHD--EHGGYGTASHQLPAIKPEDVSE 1222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,182,578
Number of Sequences: 37544
Number of extensions: 419879
Number of successful extensions: 1015
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)