Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1g05
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    26   2.7  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    25   8.4  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    25   8.4  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    25   8.4  

>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -1

Query: 375 SCRAGGIAHTADRAVDTVED*SWHGTGSESNLVEKTGSLVSHFA*KLTEANTGAEDRNLH 196
           SC+ GG A TA   +  +   S HG+      V   G+++ +    L + NTG + + L 
Sbjct: 194 SCQVGGCAATAAGGLRLLRYGSLHGSILGMEAVLPDGTILDNLV-TLRKDNTGLDIKQLF 252

Query: 195 I 193
           I
Sbjct: 253 I 253


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 367 PARHTSHDSVTLI*CHN 417
           PA HT HDS TL   HN
Sbjct: 157 PAEHTRHDSKTLGLNHN 173


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 6/29 (20%)
 Frame = -2

Query: 113 FSLIKLV---KITCNFS---IKYIFIYFS 45
           +SLIK+V   ++T   S   +KY+F+YFS
Sbjct: 210 YSLIKVVTYLRVTAKLSEAQLKYVFLYFS 238


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 294 SESNLVEKTGSLVSHFA*KLTEANTGAE 211
           +++ +VE+TGSL+   A  L  AN G +
Sbjct: 157 TDNQVVERTGSLLDKNAHSLRHANHGVQ 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,724
Number of Sequences: 5004
Number of extensions: 36854
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)