Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1g04
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 125 7e-30
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 92 8e-20
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 30 0.37
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.64
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 28 1.1
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 27 2.0
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 27 2.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 27 3.4
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.4
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 26 6.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.0
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 26 6.0
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.9
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce... 25 7.9
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 125 bits (301), Expect = 7e-30
Identities = 61/148 (41%), Positives = 94/148 (63%), Gaps = 3/148 (2%)
Frame = +2
Query: 191 SIVWVLGGPGSGKGTQCDKIVAKYG-FTHLSTGDLLRAEV-KSGSERAKCLTAIMERGEL 364
++++VLGGPG+GKGTQCD++ K+ F H+S GD LR E + GS+ + ++ G++
Sbjct: 3 NVIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKI 62
Query: 365 VPNEIVLDLLKEAILARAEES-KGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETL 541
VP EI + LL+ + ++ FLIDG+PRE Q FE+++ P +YF ET+
Sbjct: 63 VPMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFALYFRCGQETM 122
Query: 542 TQRLLGRAASSGRADDNEETIKLRLKTF 625
+RL+ R +SGR+DDN E+IK R T+
Sbjct: 123 LKRLIHRGKTSGRSDDNIESIKKRFVTY 150
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 91.9 bits (218), Expect = 8e-20
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +2
Query: 203 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEIV 382
++G PG+GKGTQ I KYG HL+TGD+LR++V +E K IM++G LV ++IV
Sbjct: 8 LVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSDDIV 67
Query: 383 LDLLKEAILARAEESKGFLIDGYPREKSQG----IAFEENIAPVSVIIYFEASSETLTQR 550
++K+ IL E GF++DG+PR Q +E ++ ++ + E L +R
Sbjct: 68 TGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRR 127
Query: 551 LLGRAASSG 577
+ GR G
Sbjct: 128 ITGRLVHPG 136
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 182 SKKSIVWVLGGPGSGKGTQCDKIVAKYGFT 271
SK I+ +LG GSGK TQ + +A+ G+T
Sbjct: 524 SKNQILVLLGETGSGKTTQITQYLAEEGYT 553
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 170 PIDTSKKSIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDL 292
P + K + V+G GSGK T + K GF ++ DL
Sbjct: 8 PTNQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDL 48
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 176 DTSKKSIVWVLGGPGSGKGTQCDKIVAK 259
D+ K +I+ + GGP SGK C++++ +
Sbjct: 4 DSVKSAIIGIAGGPFSGKTQLCEQLLER 31
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 95 KEPIVDKLPPCPLMCKSPKCKAYMAPIDTSKKSIVWVLGGPGSGKGTQCDKIVAKY 262
++ + D+L C L+ PK A+ + S++ ++G GSGK T C K+ Y
Sbjct: 76 QKAVFDEL--CSLV--DPKVDAFTPK--KGRPSVIMMVGLQGSGKTTTCSKLALHY 125
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 185 KKSIVWVLGGPGSGKGTQCDKIVAK 259
++ ++ + GGPGSGK T C I+AK
Sbjct: 28 QRVLIGLAGGPGSGKSTLC-AILAK 51
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 470 GIAFEENIAPVSVIIYFEASSETLTQRLLGRAASSGRADDNEETIKLRLKTFLDNNDLVL 649
GI+F+ A V+ YF+ S T T +LGR A + + D E L ++ L L
Sbjct: 2561 GISFDSTKAVAPVLTYFDFCSLT-TGNILGRIALAFTSID--ENANLESANIFEHARLAL 2617
Query: 650 AQY 658
Q+
Sbjct: 2618 LQH 2620
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 112 INNRLFT-RFTQFLFHCIIQKCICLFFYSLFIF 17
+N L+ + LF CII++C+ +FF + +F
Sbjct: 230 VNGELYNDESAKELFRCIIKECVDIFFKCIPLF 262
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 170 PIDTSKKSIVWVLGGPGSGKGTQCDKIVAKY 262
P + IV V+G PG+GK T +V +Y
Sbjct: 68 PDEAPPPVIVAVMGPPGTGKSTLIKSLVRRY 98
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 691 TFRVYPPEFVRVLSQYEVVVVQE 623
TF +Y P+ +RVL EV ++E
Sbjct: 55 TFEIYQPKKIRVLKTREVQYIEE 77
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.0
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +3
Query: 234 HNATRSSPNTGSLTSRLETCSGLKSKAARRGRNALPLLWKE--ASLSLMKSSWIC*KKRS 407
++ T +SP + SLTS T S L S + A + AS S+ SS S
Sbjct: 97 NSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTS 156
Query: 408 WPALKNPKASSSTATLARSHRVSLLKRTS 494
+ S+++AT S S L T+
Sbjct: 157 SSLASSSTNSTTSATPTSSATSSSLSSTA 185
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 285 ETCSGLKSKAARRGRNALPLLWKEASL 365
+ CS + S R GR +P+L K SL
Sbjct: 19 DCCSAVASALLRHGRLTIPMLQKRTSL 45
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 230 GTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEI--VLDLLKEA 403
G +KI++ + + S K R++C ++ GEL+PN + + D L+
Sbjct: 589 GVVLEKIISAVTYDNTSASYGFSDVQKINEMRSRCCFELVRLGELMPNPLMNIFDQLQSI 648
Query: 404 I 406
I
Sbjct: 649 I 649
>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 398 EAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRL 553
EA + E + GF+ + P + G+ EEN P + IYF + T T R+
Sbjct: 35 EATIPNLEVAFGFIDEVTP--VAYGVFIEENDQPAGMAIYF-LNFSTWTSRV 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,754
Number of Sequences: 5004
Number of extensions: 56272
Number of successful extensions: 210
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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