Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f24
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    67   2e-12
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    28   1.3  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   5.1  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   6.7  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   8.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.9  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 6/233 (2%)
 Frame = +3

Query: 66  QLPKPTNNIETLIHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRS 245
           Q P   +N + ++ LLK  +GTG+L +P+AF   GLV      +++GVL   C  +L+++
Sbjct: 270 QTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQT 329

Query: 246 QYAACKHLRVPLLSYPASMAAALEVGPAPFRRLARPASITVDIFLVVYQLGICCVYIVFI 425
           +           +  P S          P  R A  ASI      VV Q+G    YI F+
Sbjct: 330 R-----------MKVPGSFGDIGGTLYGPHMRFAILASI------VVSQIGFSSAYISFV 372

Query: 426 ADNIKKIVDPFYAMAVELHMLI-ILCPLIVFNLIPSLKLLAPFSAVANVL-TFIGLGIVV 599
           A  ++  V        E H+ + I    +VF  +  ++ ++  SA A +   FI LGI+ 
Sbjct: 373 ASTLQACVKVISTTHREYHLAVFIFIQFLVFVPLSLVRKISKLSATALIADVFILLGILY 432

Query: 600 YY----LATGKKSHQPLDLWGSLETFPLFFGTVLFALTAVGVVIALENNMKTP 746
            Y    +    K    + ++   + F LF G  +F    + +++ ++  M  P
Sbjct: 433 LYFWDVITLATKGIADVAMFNKTD-FSLFIGVAIFTYEGICLILPIQEQMAKP 484


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 337 LKGAGPTSSAAAMEAGYDSRGTRRCLQAAYCDRTSTWRQ 221
           L+G+G T++ + +   Y  RG + CL AA   R   + Q
Sbjct: 109 LQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQ 147


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 48  DPHEHRQLPKPTNNIETLIHLLKCSLGTGI 137
           DP +H  +   T  IE+LI  LK +  TG+
Sbjct: 257 DPRDHAYVLGATTKIESLIKALKDAESTGV 286


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 579 IGLGIVVYYLATGKKSHQPLDLWGSLETFPL--FFGTVLFALTAVGVVI 719
           +GLG+  Y+   G  S Q +    +L  F +  F GTVLF +  +GVV+
Sbjct: 411 VGLGLFNYF---GNDSSQSVYGLFALPPFLMSPFTGTVLFNMLKIGVVL 456


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/84 (25%), Positives = 30/84 (35%)
 Frame = -1

Query: 706 TAVSANKTVPKNSGKVSSEPHKSSGWWDFLPVAR**TTMPSPMNVSTFATAENGASSFRL 527
           TA + +  +PK S     +PH++       P A      P P   S   T      +  L
Sbjct: 186 TATTQHTQLPKTSAVSHQKPHEAPSTAVKAPTATVAENEPYPKPQSVPTTTSPNNENNAL 245

Query: 526 GIRLNTINGQRMISMCSSTAIA*N 455
               N IN  R  +  S +  A N
Sbjct: 246 RSTANVINNTRQSTATSPSMFAGN 269


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
 Frame = -1

Query: 727 SRAITTPTAVSANKTVPKNSGKVSSEPHKSSGWWD-FLPVAR**TTMPSPMNVSTFATAE 551
           S  IT+PTAV+++  +  +S   SS P  SS   +   P+     T  S +N ST  T+ 
Sbjct: 369 STQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPI-----TSSSVLNSSTPITSS 423

Query: 550 NGASSFRLGIRLNTINGQRMISMCSSTAIA*NGSTIFLMLSAMNT 416
           +  +S         +N    I+  SSTA+  N ST     S +N+
Sbjct: 424 SILNSSTPITSSTVLNSSTPIT--SSTAL--NTSTPITSSSVLNS 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,404
Number of Sequences: 5004
Number of extensions: 52163
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)