Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f24
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.58 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.58 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.58 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.58 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 102 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 248
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 102 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 248
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 102 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 248
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 102 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 248
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 324 PAPFRRLARPASITVDIFLVVYQLGICCVYIVFIADNIKKIVDPFYAMAVELHMLIIL-- 497
           PAP +      +I   + L++  +G CCV  +F      +     + +++ +  +I+   
Sbjct: 50  PAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFE 109

Query: 498 CPLIVFN 518
            P++V +
Sbjct: 110 MPMLVIS 116


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 324 PAPFRRLARPASITVDIFLVVYQLGICCVYIVFIADNIKKIVDPFYAMAVELHMLIIL-- 497
           PAP +      +I   + L++  +G CCV  +F      +     + +++ +  +I+   
Sbjct: 50  PAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFE 109

Query: 498 CPLIVFN 518
            P++V +
Sbjct: 110 MPMLVIS 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 602 LPGDRQEVPPAARLVG 649
           LP + Q  PP+A LVG
Sbjct: 292 LPPETQPTPPSATLVG 307


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 431 QHQEDRGSVLRDGGGTAHADHPLP 502
           QHQ+D GS + DG G   +  P P
Sbjct: 95  QHQQDHGSGM-DGMGGYRSASPSP 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,224
Number of Sequences: 438
Number of extensions: 3627
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)