Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f23
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   0.75 
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    27   1.7  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       26   3.0  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 194 LKGLATIHKF--TKWVIHVDGLDVIAMVIWY*TKKQDFVLTWTLANLKMSNLKNLNQESL 367
           L+GLA +H+   +   +H+D + +         K  DF  T TL ++  S+  N+N +S+
Sbjct: 359 LEGLAELHRLGISHKSLHLDNVVLFHSGHRTFAKLMDFGFTRTLRDMNASHPFNINSQSI 418

Query: 368 T 370
           T
Sbjct: 419 T 419


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 157 HPYHTRCDANTISQRTCDNP 216
           HP H+  D N+ SQR  D+P
Sbjct: 381 HPIHSSVDNNSFSQRDFDSP 400


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 219 LWIVASPLRNCVRITSCVIRMHQTWTVRYATLVIQ 115
           LW +A P R  +  T  +  +HQ   + Y T VI+
Sbjct: 75  LWTLALPHRTQIVYTPDIALIHQKLRITYGTRVIE 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,294
Number of Sequences: 5004
Number of extensions: 41857
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)