Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1f22
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 30 0.35
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 28 1.4
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 28 1.4
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 27 2.5
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 2.5
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 26 4.3
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 26 5.7
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 5.7
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 7.5
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 7.5
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 29.9 bits (64), Expect = 0.35
Identities = 23/77 (29%), Positives = 32/77 (41%)
Frame = +1
Query: 430 KTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNL 609
K + TF+ LK P++ + V L +L +E E LR DAL N
Sbjct: 41 KFSFTFNGLKEEDGPILFDFSKNLITEETVELLVKLAKEANVEGLR--DALFAGEHINFT 98
Query: 610 KDEIAKHPLSKLVSWLP 660
+D HP + VS P
Sbjct: 99 EDRAVFHPALRNVSEKP 115
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 262 CINFPRNLNYDSPSSCSVTCGRNLNIEFRSIVDN 363
CI RNLNY+ SC V + +E S+ D+
Sbjct: 631 CIKKRRNLNYNENLSCKVDLDKKKMLETLSLSDS 664
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 374 LMRKLSTIERNSMLRFLPHVTLQLDGLS*FKFLG 273
LM + ++++ M +P +TL +DGLS F LG
Sbjct: 98 LMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLG 131
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/72 (22%), Positives = 35/72 (48%)
Frame = -1
Query: 597 GSLQDQRIRKPQFL*ASLLTQLFQVGYEICRDSSSMTIQYDRIPAILKLMKGIIGFEISD 418
G+ DQ R+ ++++++L GY + + +IQ D+ + KGI+ +S
Sbjct: 86 GAGGDQAARQEDKPRSAIISELLSRGYHLSDVTLEKSIQLDQSYGVSSKFKGILESALSG 145
Query: 417 VLNFRVRQYMPD 382
V + R ++ +
Sbjct: 146 VRSVNERYHVTE 157
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 271 FPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGIWHILPN 402
F N++ S CS+ NL+ + R ++ N+ R+G HIL N
Sbjct: 1775 FSENIHTLYFSCCSMIAKENLDDQLRELLKNYFNRVG--HILLN 1816
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 496 TAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPL 636
T V+ F+ L+ +E+ EK+ D + F LKDE PL
Sbjct: 465 TKVSKTFLKKLDAFHEEKLREKINSSDKGDVSYEFELLKDETVFSPL 511
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 258 REYHFPLDRFIVSEHQGQHGN 196
R Y +P D F+VS + Q GN
Sbjct: 192 RSYFYPQDSFLVSHAEWQDGN 212
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 406 EIKDVADLKTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGS 555
E+ D + T EL N NPV+ + ++V LE CQ+R S
Sbjct: 242 ELFTTEDFEDKETL-ELVNRLNPVVWRTYLRKSLNSYVDKLEVYCQKRKS 290
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 445 FHELKNSRNPVILYCHGTAVAANFVSNL 528
FH N + PV ++ HG + N S+L
Sbjct: 108 FHPPNNGKLPVFIFSHGLVGSRNVYSSL 135
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 275 RET*TTIARLVAAL---HAGETSTLSSVRSWTI 364
R + TTI R A++ H G+TSTLS RS +I
Sbjct: 309 RSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSI 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,346
Number of Sequences: 5004
Number of extensions: 49555
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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