Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1f22
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical ... 50 2e-06
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z36238-8|CAH04738.1| 448|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z36238-7|CAA85278.2| 506|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z54281-7|CAA91050.2| 202|Caenorhabditis elegans Hypothetical pr... 29 4.0
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 28 5.3
AC006636-2|AAF39797.1| 325|Caenorhabditis elegans Hypothetical ... 28 6.9
U88308-18|AAK68217.1| 198|Caenorhabditis elegans Uncoordinated ... 27 9.2
U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated ... 27 9.2
U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated ... 27 9.2
U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated ... 27 9.2
U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated ... 27 9.2
AF144262-1|AAD37370.1| 289|Caenorhabditis elegans AP180-like ad... 27 9.2
AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like ad... 27 9.2
AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like ad... 27 9.2
AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear horm... 27 9.2
>AC024878-2|AAK85512.1| 345|Caenorhabditis elegans Hypothetical
protein Y97E10AL.2 protein.
Length = 345
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +1
Query: 418 VADLKTNNTFHELKNSRNPVILYCH--GTAVAANFVSNLEELCQERGSEKLRLPDALVLE 591
V D KT + + + PVI++ H GT V+ V +L S + + P L+LE
Sbjct: 166 VEDTKTVYEWLKENCGKTPVIVWGHSMGTGVSCKLVQDL--------SREQQPPCGLILE 217
Query: 592 APFNNLKDEIAKHPLSKLVSWLPYF 666
+PFNNLKD + HP+ + SW+ F
Sbjct: 218 SPFNNLKDAVTNHPIFTVFSWMNDF 242
Score = 44.4 bits (100), Expect = 7e-05
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Frame = +1
Query: 196 VAVLPLMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSV-TCGRNLNIEFRSIVDNFLI 372
V LP++ + + + F N P N +Y+ +S +V + GR+L++ +S
Sbjct: 24 VIFLPILVYFLPRYTQFIFFLNFRRLP-NTDYNDLASNNVKSIGRSLHLPGKSG------ 76
Query: 373 RLGIWHILPNS---EIKDVADLKTNNTFHE-LKNSRNPVILYCHGTAVAANFVSNLE 531
R+G+WHILPN E + T F + +++S N +I Y HG + F +E
Sbjct: 77 RIGVWHILPNKLSLEWRTEGKHPTERDFDDMMRDSENQIIFYAHGNSFDRTFYHRVE 133
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 212 RGSTATWNTRTPAVSEAPVAKRSPKTMLRRKYST 111
RGSTA TR P + AP A R+P R +T
Sbjct: 298 RGSTAAPGTRAPPATRAPPATRAPPATTRAPPAT 331
>Z36238-8|CAH04738.1| 448|Caenorhabditis elegans Hypothetical
protein R74.8b protein.
Length = 448
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 211 LMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLN 336
LM R K ++V + + +P + YD S + C RNLN
Sbjct: 186 LMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLN 227
>Z36238-7|CAA85278.2| 506|Caenorhabditis elegans Hypothetical
protein R74.8a protein.
Length = 506
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 211 LMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLN 336
LM R K ++V + + +P + YD S + C RNLN
Sbjct: 186 LMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLN 227
>Z54281-7|CAA91050.2| 202|Caenorhabditis elegans Hypothetical
protein F46C5.2 protein.
Length = 202
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 418 VADLKTNNTFHELKNSRNPVILYCHGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAP 597
+ADL+ N EL+ R +L C T V N + C + S RLP A E
Sbjct: 92 LADLEMNRRTSELRMRRVGAVLLCEDTFNQTTCVCNRRDKCNDIHS---RLPFATYAEGL 148
Query: 598 FNNL 609
F +
Sbjct: 149 FRGV 152
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 416 SLISEFGSICQIPNLMRKLSTIERNSMLRFLPHVTLQ 306
S++ F SI Q+ + + LSTIERN + L +Q
Sbjct: 195 SIVCNFLSIMQLKLMKKNLSTIERNLLFSTLASSVIQ 231
>AC006636-2|AAF39797.1| 325|Caenorhabditis elegans Hypothetical
protein F40C5.1 protein.
Length = 325
Score = 27.9 bits (59), Expect = 6.9
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Frame = +1
Query: 403 SEIKDVADLKTNNTFHELKNSRNPVILYCHGTAVAA------NFVSNLE--EL------C 540
S+++ V + K N+F++++NSRN + H A AA NF +E EL
Sbjct: 152 SDMRCVVE-KIYNSFYDIQNSRNETLKIGHIEAHAAPVTWNCNFHQGIEKWELLAMGSDT 210
Query: 541 QERGSEKLRLPDALVLEAPFNNLKDEIAKHPLS 639
+ER S RL D L + +L ++I K+ LS
Sbjct: 211 EERVSSAARLADILRKQGVRGSLVEKIHKNILS 243
>U88308-18|AAK68217.1| 198|Caenorhabditis elegans Uncoordinated
protein 11, isoform f protein.
Length = 198
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 236 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 132
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 92 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 127
>U88308-17|AAK68214.1| 657|Caenorhabditis elegans Uncoordinated
protein 11, isoform c protein.
Length = 657
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 236 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 132
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 551 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 586
>U88308-16|AAK68212.1| 586|Caenorhabditis elegans Uncoordinated
protein 11, isoform a protein.
Length = 586
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 236 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 132
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 480 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 515
>U88308-14|AAK68213.1| 546|Caenorhabditis elegans Uncoordinated
protein 11, isoform b protein.
Length = 546
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 236 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 132
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 440 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 475
>U88308-13|AAK68215.1| 534|Caenorhabditis elegans Uncoordinated
protein 11, isoform d protein.
Length = 534
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 236 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 132
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 428 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 463
>AF144262-1|AAD37370.1| 289|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 289
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 236 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 132
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 183 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 218
>AF144259-1|AAD37367.1| 546|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 546
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 236 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 132
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 440 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 475
>AF144257-1|AAD37365.1| 586|Caenorhabditis elegans AP180-like
adaptor protein protein.
Length = 586
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 236 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 132
T + N +G+ A WNT T AVS P A +P+ M
Sbjct: 480 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 515
>AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 260 protein.
Length = 398
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 568 LPDALVLEAPFNNLKDEIAKHPLSKLVSWLPYF 666
LPD +VLE + +E A + LPYF
Sbjct: 127 LPDVIVLEDQYETFLEEFASFQKKQFSEHLPYF 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,638,270
Number of Sequences: 27780
Number of extensions: 272081
Number of successful extensions: 1003
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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