Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f20
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    25   6.3  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   8.3  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   8.3  

>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 497 IINKKFTEYGFEELLEMI-PSFPF*HRASFRQNSFEMSSL 381
           +I   F E+  E   E   P FPF H+ASF   +   S L
Sbjct: 138 LIPSDFLEHYIEGYFEWFHPVFPFIHQASFNSENVAASFL 177


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 442 LHFLFNIAPPFARTVLRCLHCHVPSGPVN 356
           + FLFN  P   + V+RCL  ++P   +N
Sbjct: 1   MSFLFNKRPKSTQDVVRCLCDNLPKLEIN 29


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 191 IHHNIIRTVPGTE 229
           I HNIIR++PG E
Sbjct: 338 IQHNIIRSIPGLE 350


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 435 SFLTSRLLSPEQF*DVFIATYL 370
           SFLTS LL  + F   F+ TY+
Sbjct: 27  SFLTSSLLDDDNFFSPFLITYI 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,050
Number of Sequences: 5004
Number of extensions: 46997
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)