Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f20
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641...    29   3.7  
08_02_0202 - 14202996-14203241,14203630-14203823,14203947-142045...    27   8.5  
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701...    27   8.5  

>08_01_0722 +
           6412654-6412860,6413142-6413687,6413745-6413877,
           6413917-6414035,6414128-6414883,6415209-6415258,
           6415560-6416679
          Length = 976

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +1

Query: 211 NGSGYRSGSER*WRLPTPAVSGDYTDNKQSDSIHYTEYL---KKTTQALRK 354
           N +GYRS   + W  P P   GD  +   S+     + +    KTT AL K
Sbjct: 194 NNNGYRSQGGQVWNQPRPYYQGDNNNGNFSNQPSLKDLVFAPAKTTDALSK 244


>08_02_0202 -
           14202996-14203241,14203630-14203823,14203947-14204559,
           14205422-14205535
          Length = 388

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 385 HCHVPSGPVNFSLEPVS 335
           HCH P+GP+   LE V+
Sbjct: 202 HCHAPTGPMEMPLENVA 218


>03_02_0270 -
           7011363-7012302,7013237-7013640,7014264-7014333,
           7014835-7015331,7015959-7016283,7018060-7018292
          Length = 822

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +1

Query: 226 RSGSER*WRLPTPAVSGD----YTDNKQSDSIHYTEYL 327
           RS     WRLPTP V GD     T N    + + TE+L
Sbjct: 642 RSQQSALWRLPTPMVFGDRPVVVTKNSTYSANNITEFL 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,109,560
Number of Sequences: 37544
Number of extensions: 283296
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)