Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f20
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.74 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 199 QHYQNGSGYRSGSER*WRLPTPAVSGDYTDNKQSDSIHYTEYLKKTTQA 345
           +HY+N    R+G    W    P +SG  T     +   Y  YLK +  A
Sbjct: 371 KHYENEMRLRNGCPADWLWIVPPISGSATPVFHQEMALY--YLKPSYDA 417


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 387 FIATYLPVLSTFP 349
           +I  YLPVL  FP
Sbjct: 445 YIRRYLPVLKNFP 457


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 148 KMYITRGQISSFRLNQKVTCSYHV 77
           K+  T    S FR+N  + C Y +
Sbjct: 453 KVETTHSGTSLFRINLGIECGYEI 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,319
Number of Sequences: 438
Number of extensions: 3342
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)