Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1f11
(340 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 28 0.45
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 1.4
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 1.4
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 25 2.4
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c... 25 2.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 3.2
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 25 3.2
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 24 7.3
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 7.3
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 23 9.6
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 23 9.6
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 0.45
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = -2
Query: 273 FSLPRLQFTITYYNFLVDFMIW*SSCWLPLVLASCRNKCTKNRIYNSDNTGLWCICNRLR 94
+SLP L + Y++ D M S W +++ R + T N+ Y + LWC+ R+
Sbjct: 174 YSLPVLIRHVLLYDYYTDDMK--DSLWRAMIIYVSR-QVTSNK-YTKFH--LWCVQKRIG 227
Query: 93 NLRTALL 73
N+R L+
Sbjct: 228 NIRMYLV 234
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 1.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 83 VRRLRRRLQMHHKPVLSEL*MRFFVHLFRQEASTSGSQQE 202
+R + R+Q++ KP+ EL ++F ++ + + GS E
Sbjct: 124 LRSVCERIQLNGKPISQELFTKYFFDVWERLENAVGSDSE 163
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 1.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 185 WCWLLAGTNARRIAFTI 135
WCWL+AG IA ++
Sbjct: 98 WCWLIAGAGCMCIALSV 114
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 192 LPLVLASCRNKCTKNRIYNSDNTGLWCICNRLRNLRT 82
+P L ++C YN + G +CIC+ + N T
Sbjct: 97 IPCNLRKSVDECGSENDYNHNFEGRFCICDTVYNPET 133
>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 50
Score = 25.4 bits (53), Expect = 2.4
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Frame = +3
Query: 84 CGGCGDDCKC---TINQC-CQNCKCDS 152
C C + C C ++ C C +CKC S
Sbjct: 23 CQDCKESCGCKSSAVDNCKCSSCKCAS 49
Score = 25.0 bits (52), Expect = 3.2
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Frame = +3
Query: 93 CGDDCKCTINQCCQNCKCDSS----CICSGKKPA 182
C KC C ++C C SS C CS K A
Sbjct: 15 CDCQSKCGCQDCKESCGCKSSAVDNCKCSSCKCA 48
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 3.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 161 NARRIAFTILTTLVYGAFAIVSATSARHC*WFEMRLIWLN 42
NA+ A T TT V+G +V+ TSA F + W N
Sbjct: 2060 NAQVTAVTTKTTNVHGDEMVVTTTSAYENEKFSSKTEWRN 2099
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.0 bits (52), Expect = 3.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 57 SHFKPLTMPCGGCGDDCKCTI 119
S FK LT C G D+C C +
Sbjct: 702 SSFKTLTTMCFGGDDNCGCQV 722
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 199 LLASTGAGFLPEQMHE 152
L+A T G +PE++HE
Sbjct: 256 LIAKTAEGLVPEEIHE 271
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 23.8 bits (49), Expect = 7.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 337 FFSNLNVLCLLIRLHSQYYDTIFITEITIYNYVL*FSSRFHDLVVFL 197
FF NV+ I Q+Y+ I Y YV+ F+ F L V +
Sbjct: 1095 FFFYKNVIWTFILFWYQFYNEFDGNYIFDYTYVMLFNLLFTSLPVII 1141
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 141 YNSDNTGLWCICN 103
YNSD + W ICN
Sbjct: 517 YNSDTSRTWDICN 529
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +2
Query: 65 QTINNAVRRLRRRLQMHHKPVLS 133
+ +NNA++ L+ L++ KP L+
Sbjct: 399 EAVNNALKALQHTLKISSKPTLT 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,170
Number of Sequences: 5004
Number of extensions: 24917
Number of successful extensions: 70
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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