Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f09
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    27   2.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   3.4  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    26   4.5  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   4.5  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    26   5.9  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   5.9  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   7.8  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   7.8  
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...    25   7.8  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   7.8  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    25   7.8  

>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 187 GHK*LKFIKSTLRNNRETEMESFQEERSCSNPGVHSLEAF-ERLSVW 324
           GH      KS+ RN+ E E+   Q+ER      + + E+  + L VW
Sbjct: 29  GHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVW 75


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 149 VNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKV 253
           VN+   L K +     N  + N+ Y++T +  WKV
Sbjct: 663 VNTSATLSKDLMSLPINEWVKNVMYIVTHETDWKV 697


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +2

Query: 101 DSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKP 241
           D G+D+ Y   +        DF K  +D+   +  + N+ +V    P
Sbjct: 60  DGGADEPYDSSDSCATFEFADFFKDNLDDFALDGPIININHVNQTSP 106


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 381 RRKKRNFPHSAQNLDGTYRGKLKKDHTHQIKGSLPMSK*FDLENSLRGD 527
           R K R  PHS   L G    +  K+HT+  KG L     F ++ +  GD
Sbjct: 19  RNKSRKRPHS---LGGPGALQELKEHTNPAKGILKSYSSFSVDPAFTGD 64


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 3   HPNNQIYMQTLKMKVKK*SIQNDRKLNARNKELIQGAIKITNCKI-KW--VWSIVK 161
           +P N   + TL       S+QN  KL   NK L+QG I   +  + +W   W++V+
Sbjct: 192 YPFNPQEVNTLNKHRHSASLQNLYKLLDENKVLMQGTIHWLHGNLHRWSKCWAVVR 247


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 280  PGVHSLEAFERLSVW*QRSLQTKSHAQRSHNTLSAE 387
            P +HS+++FE  S +  RSL  K   +R+++  + E
Sbjct: 906  PHMHSVKSFETESSFGNRSLSPKQENRRTYSDSTIE 941


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 413 TKSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRKF 514
           TKS  N+  K +K P +  + V+ N+K ++ +KF
Sbjct: 26  TKSSDNVTPK-QKSPNSTEEDVSLNLKTLKAKKF 58


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 327 TAVLANKKSRPKESQYIIRRKKRNFPHSAQNLDGTYRGKLKKDHTHQIKGSLPMSK*FDL 506
           +AVLA  K R +  +        + PH A N     R K    H HQ   S+P S+ F  
Sbjct: 51  SAVLAEWKRRKRRLKG--SNSDSDSPHHASNPHPNSRQK----HQHQTSKSVPRSQRFSR 104

Query: 507 ENSLRGDSIR-FLITPTEHQS 566
           E +++ ++ + F    T+ QS
Sbjct: 105 ELNVKKENKKVFSSQTTKRQS 125


>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 146 LVNSKDFLKKKVDEATSNS-SLSNLRYVITEKPKWKVFKKREAVAI 280
           L NS D + KK+D + ++S +L  + Y +T++PK++     + +A+
Sbjct: 251 LNNSTDAVPKKLDASKASSLNLEKVSY-LTDEPKFRFDFNNDEMAV 295


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 242 KWKVFKKREAVAIPAYTALKPLKGCPCGNSGPCKQKVTPKGVTIHYPQKKKKFS 403
           K    K  + V++P ++ ++  +G     SGP     T  G  I++P+KK + S
Sbjct: 229 KLSASKNSQRVSLPFFSKIELDEGSSF--SGPKISARTSSGKIIYFPKKKNRHS 280


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 299 KPLKGCPCGNS-GPCKQKVTPKGVTIHYPQKKKK 397
           K L  C    S GPC   V+PKGV    P  K +
Sbjct: 24  KILAACSYSLSVGPCSLAVSPKGVNSKSPSLKNE 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,565
Number of Sequences: 5004
Number of extensions: 63698
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)