Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f09
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0417 - 8915604-8916779,8916863-8917270                           30   1.5  
08_02_1182 + 24992256-24992708,24992942-24993238                       30   2.0  
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310...    29   3.5  
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    29   3.5  
01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620...    28   6.1  

>09_02_0417 - 8915604-8916779,8916863-8917270
          Length = 527

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 89  KQRTDSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKVF 256
           K +  SG  +  QL +K  L+ +++     ++EA  N +  +    +  +PKWK +
Sbjct: 194 KAKYPSGHSEGMQLMDKTWLMYNEEARVMYLEEAEHNFAFDHCWKAVWNQPKWKAY 249


>08_02_1182 + 24992256-24992708,24992942-24993238
          Length = 249

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 353 TPKGVTIHYPQKKKKFSAFGT-KSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRKFPTWRL 529
           TP  +++H   + K+     T +     PG   KG       V+P   V R ++   W+L
Sbjct: 170 TPSHLSVHSSSQDKEVDGESTDEGNSGSPGSKRKGKRKKGIFVSPTKSVARVKRSDCWKL 229

Query: 530 DKI 538
            K+
Sbjct: 230 FKV 232


>06_03_0766 -
           24425486-24426245,24430766-24430855,24430951-24431070,
           24431568-24431746,24432046-24432231,24432454-24432547,
           24432679-24432743,24433652-24433987
          Length = 609

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 29/101 (28%), Positives = 41/101 (40%)
 Frame = +2

Query: 218 RYVITEKPKWKVFKKREAVAIPAYTALKPLKGCPCGNSGPCKQKVTPKGVTIHYPQKKKK 397
           RY+I E P W+    +    +   T+     GCP G+S        P G      Q   K
Sbjct: 330 RYLI-ENPYWQDTFPKYKPRVFHRTSDGSTSGCPFGSSCHFLHNF-PGGY-----QAAAK 382

Query: 398 FSAFGTKSRRNIPGKTEKGPYAPNQRVTPNVKVIRPRKFPT 520
            ++ G  +    PG+   GP APN   T +VK     K+ T
Sbjct: 383 MTSHGGTAVAAPPGRMPLGPGAPNGPPTSSVKTRMCNKYNT 423


>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
            33319949-33320011,33320103-33320496,33320684-33320796,
            33320932-33321639,33321667-33323199,33323395-33323607,
            33323718-33324700,33324890-33325423,33325694-33325820,
            33326083-33326162,33327347-33327377,33327949-33328053,
            33328119-33328124,33328349-33328985,33329144-33329478,
            33330394-33331113
          Length = 2792

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 3    HPNNQIYMQTLKMKVKK*SIQNDRKLNARNKELIQGAIKITNCKIKWVWSIV 158
            HP+  +++  LK  +K  ++ ND  L  R K L  G ++I+N      W +V
Sbjct: 1341 HPSLLLFLHRLKC-IKFKNMMNDTLLVMRRKALGNGIVRISNGNDMMSWLVV 1391


>01_06_1254 +
           35761046-35761162,35761332-35761416,35761877-35762017,
           35762118-35762206,35762519-35762701,35763509-35763697,
           35763808-35763938,35764023-35764125,35765123-35765308
          Length = 407

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +2

Query: 86  KKQRTDSGSDKNYQLQNKMGLVNSKDFLKKKVDEATSNSSLSNLRYVITEKPKWKVFKKR 265
           KKQ+     DK + L+NK    N + + KKK +E      L++L  V   +PK  V    
Sbjct: 15  KKQKVVE--DKTFGLKNKNKSKNVQKY-KKKEEEKAREKELNDLFKVAVSQPKVPVGVDP 71

Query: 266 EAVAIPAYTALKPLKGCPC 322
           +++    +   +  KG  C
Sbjct: 72  KSIVCEFFKVGQCQKGFKC 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,078,634
Number of Sequences: 37544
Number of extensions: 357327
Number of successful extensions: 760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)