Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1f06
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.84
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 28 1.1
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 1.9
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 2.6
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 27 3.4
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 3.4
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 26 4.5
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 26 5.9
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 26 5.9
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 5.9
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 7.8
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 7.8
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 28.7 bits (61), Expect = 0.84
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 292 EDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIAD 423
E+ D+ ++++E+ ++ P STP + +P+E+QI D
Sbjct: 243 EEDEEDSDVELSESSLSDDEDSPLRCPSTPVQTAAAPNESQIPD 286
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 181 QNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKP 360
Q ++ KP NS + +P+ + + C L + D ++ E+ S P
Sbjct: 162 QPEDTKPNTNSPPVYHTVLRPTPETLWQDLCLLSESFANSLSDEAVLTLESNILLASEAP 221
Query: 361 KFVTSTPDEKKESPSENQIADSNPEC 438
F+T + + NQ+ADS P C
Sbjct: 222 LFLTPAKSKAEMIQFMNQLADSAPPC 247
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 148 LEEMDAADRLLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGG 303
L M A R ++ +PRD ++ + KPS+ D + +LF +A G
Sbjct: 408 LSRMGAEKRAKLAEKDRPRDVAERVALGLSKPSMSSDTMIDSRLFNQASGLG 459
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 250 KRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPS 405
K + T + +L + + A+ + N EN KP F P + +E+PS
Sbjct: 485 KTEATTDKKLNVPKFEFKPTATADVQTNRLKENEPKPTFFAQLPSKTQETPS 536
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 289 AEDGGGDASIKI-NENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEG 450
AE+G + K N +MP NS K T + PS N S+P + G
Sbjct: 391 AENGSTNLPQKTSNSDMPTANSMPVKLENGTDYSTSQEPSSNANNQSSPTSSING 445
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +1
Query: 364 FVTSTPDEKKESPS---ENQIADSNPE 435
F T+TPD K ESPS N D +PE
Sbjct: 86 FCTTTPDPKTESPSFVKYNAHCDDHPE 112
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.5
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +1
Query: 301 GGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGL 480
G D ++ N+P S + ++ +S S+ S P D + LP +
Sbjct: 383 GRDVQGELGLNIPWNTSSRSNSAINS-----KSHSQTGSEHSTPLLDTKYRKRLPHSPSM 437
Query: 481 PSTVTVLDAPDGGKVYLIGTAHFSLQSQED--VSRVIQEVKPHIV 609
PS V L A + + + + SLQ +D + + QE H++
Sbjct: 438 PSRVEFLPALESSQFHETLNSELSLQLSDDFVLYKNTQEENAHLM 482
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +1
Query: 235 PKPSVKRDITNECQLFIKAEDGGGDASI---KINENMPGENSGKPKFVTSTPDEKKESPS 405
PKP V E I DG S+ K + GEN+ + T +E E PS
Sbjct: 410 PKPPVMGTWAKEPNHLIGIIDGKHSHSLHHDKFDACTKGENTANNGYGPQTLNETSEEPS 469
Query: 406 ENQIADSN 429
+ I D++
Sbjct: 470 LDDILDTS 477
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 244 SVKRDITNECQLFIKAEDGGGDASIKINENMPG 342
SV RD+ +L K + GGD I++ N PG
Sbjct: 30 SVNRDVAAYTELAAKNVNAGGDEEIRV-ANYPG 61
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 136 GNRYLEEMDAADRLLQNDEHKPRDNSDGIIFAPPKPSVKRDITNE 270
G +YL+E D + L Q EH + N I SVK + N+
Sbjct: 252 GGKYLKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINK 296
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 620 NSTVTMWGFTSCITRDTSSCDCRLKCAVPIKYTFPPSGASSTVT 489
+ST T T +T T+S C +PI YT P+ S + T
Sbjct: 750 SSTTTTSTSTGSVT--TTSTTATASCTLPISYTSTPTTTSISGT 791
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +1
Query: 319 KINENMP---GENSGKPKFVTSTPD 384
K +EN P E SGKP+F+ +PD
Sbjct: 18 KTSENPPHTSNEYSGKPEFINLSPD 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.135 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,139
Number of Sequences: 5004
Number of extensions: 50355
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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