Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1f06
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0367 - 24444268-24444393,24444524-24444635,24444721-244448... 44 1e-04
08_02_1466 + 27322340-27322610,27322907-27322995,27323276-273233... 41 8e-04
09_04_0751 + 19927164-19927835,19927926-19928663 30 1.5
04_04_0336 + 24500665-24502647 30 2.0
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 29 3.5
11_06_0638 - 25719109-25719334,25719485-25719510,25719974-257200... 28 6.2
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 28 6.2
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 28 6.2
01_01_0284 - 2357085-2357244,2357354-2357730,2359114-2359371 28 6.2
12_02_0719 + 22500217-22500395,22500506-22500551,22500671-225007... 28 8.1
07_01_0728 + 5553506-5553954,5554749-5554836,5556945-5557199,555... 28 8.1
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 8.1
>05_05_0367 -
24444268-24444393,24444524-24444635,24444721-24444821,
24445727-24445831,24445929-24446015,24446630-24446689,
24446834-24446881,24447571-24447816
Length = 294
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 520 KVYLIGTAHFSLQSQEDVSRVIQEVKPHIVTVELCVQRTNIL 645
+VY++GTAH S +S + V VI +KP V +ELC R IL
Sbjct: 71 RVYVVGTAHVSQESCDQVKAVIDYLKPQAVFLELCASRVAIL 112
>08_02_1466 +
27322340-27322610,27322907-27322995,27323276-27323368,
27323515-27323613,27323763-27324017
Length = 268
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +1
Query: 523 VYLIGTAHFSLQSQEDVSRVIQEVKPHIVTVELCVQR 633
V+++GT+H S +S DV RV++ V+P V VELC R
Sbjct: 51 VWILGTSHLSEESVADVERVLRAVRPDNVVVELCRSR 87
>09_04_0751 + 19927164-19927835,19927926-19928663
Length = 469
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -2
Query: 374 DVTNFGFPLFSPGIFSLIFIDASPPPSSAFIN 279
D T++GF LFSP + +++A PP + A+++
Sbjct: 253 DDTSYGFHLFSPTTETKAWLEARPPRTVAYVS 284
>04_04_0336 + 24500665-24502647
Length = 660
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 514 GGKVYLIGTAHFSLQSQEDVSRVIQEVKPHIVTVELCVQRTNILLLDEEVI 666
GG +Y++ + S +S D +I+ V+P V +L + + +EE +
Sbjct: 58 GGVIYILAAQNLSERSASDADSLIRRVRPAAVVTQLAHTAADDVRAEEECL 108
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 247 VKRDITNECQLFIKAE-DGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIAD 423
V D+ N +K E +GGGD K +E + + +S+ DE+++ ++ +
Sbjct: 140 VDADMNNVSLALVKEEAEGGGDREDKSDEEESESSKEESSEASSSSDEEEDKRESSEASS 199
Query: 424 SNPE 435
S+ E
Sbjct: 200 SSDE 203
>11_06_0638 -
25719109-25719334,25719485-25719510,25719974-25720058,
25720189-25720320,25720615-25720673,25720742-25721048,
25721572-25721653,25721730-25721863,25721948-25722041,
25722112-25722235,25722497-25722556
Length = 442
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 328 ENMPGENSGKPKFVTST-PDEKKESPSENQIADSNPECDMEGVPELP 465
E PG+NS + K VT T P+ ++ + +IAD P E + + P
Sbjct: 318 EFSPGQNSKRHKKVTETSPNGEENQLQQPKIADQQPSGHEEQMDQQP 364
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 ENMPGENSGKPKFVTSTPDEKKESPSENQIAD-SNPECDMEGVPELPLDEGLPSTVTVL 501
E GE +PK + EK+E P+E + A + + + GVP LP +G +T VL
Sbjct: 128 EEEQGEEEEEPKKEEADEGEKEEKPAEEEAAAVVDKDIALWGVPLLP-SKGDDATDVVL 185
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = +1
Query: 232 PPKPSVKRDITNECQLFIKAED--GGGDASIKINENMPGENSGKPKFVTSTPDEKKESPS 405
PP K+ N+ +F K GGG K +PG G+ F+ D +
Sbjct: 27 PPADGTKKKKNNKKSMFKKTSKAGGGGAGRSKHPLRVPGMRPGERCFICKAADHVAKVCP 86
Query: 406 ENQIADSNPEC 438
E + + N C
Sbjct: 87 EKSLWEKNKIC 97
>01_01_0284 - 2357085-2357244,2357354-2357730,2359114-2359371
Length = 264
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Frame = +1
Query: 286 KAEDGGGDASIKINENMPGENSGKPKFVTSTPD--EKKESPSENQIADSNPECDMEGVPE 459
K D G SI + GEN + + S P E EN+ + E D E +
Sbjct: 97 KISDEKGFNSITLTRTYQGENI---EVLVSMPSLVTGDEPDRENEADEDRNEDDQEEETQ 153
Query: 460 LPLDEGLPSTVTVLDAPDGGKVYLIGTAH 546
+P TVT+ +G + I TA+
Sbjct: 154 KAPKSSIPLTVTISKGEEGPSLEFICTAY 182
>12_02_0719 +
22500217-22500395,22500506-22500551,22500671-22500745,
22500846-22500932,22501077-22501148,22501267-22501338,
22501448-22501519,22501644-22502510
Length = 489
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 298 GGGDAS--IKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSN 429
G DA I +NEN ENS + F S+PD E N D +
Sbjct: 190 GKNDAENEIIVNENEGEENSAENTFSLSSPDITLEEHDNNNCVDQD 235
>07_01_0728 +
5553506-5553954,5554749-5554836,5556945-5557199,
5557816-5557988,5558134-5558242
Length = 357
Score = 27.9 bits (59), Expect = 8.1
Identities = 27/102 (26%), Positives = 39/102 (38%)
Frame = +1
Query: 280 FIKAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPE 459
+ KA+ GG A N + P+ V S E A + D+E E
Sbjct: 50 YAKAKGGGKPAGATSNRGKV--RAKDPRGVASEEGAAGEFEGGGGGAGGGDDLDVEF--E 105
Query: 460 LPLDEGLPSTVTVLDAPDGGKVYLIGTAHFSLQSQEDVSRVI 585
LP D P+ T LD GG+ T F+ S+ D + +
Sbjct: 106 LPTDPLPPTYDTALDVGPGGRPLFAFTDTFASFSRRDANAYV 147
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 226 FAPPKPSVKRDITNEC--QLFIKAEDGGGDASIKINE 330
F PKP++ I NEC QL ED D ++ ++E
Sbjct: 650 FKWPKPAISTSIRNECIEQLQFLIEDAQKDEALHVSE 686
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.135 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,970,732
Number of Sequences: 37544
Number of extensions: 304889
Number of successful extensions: 690
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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