Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1f06
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical pr... 69 4e-12
U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical pr... 69 4e-12
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 31 0.79
AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical ... 30 1.8
AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical ... 30 1.8
AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical ... 30 1.8
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 29 4.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.2
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 5.5
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 5.5
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 5.5
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 5.5
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 5.5
AF000299-7|AAC47982.1| 168|Caenorhabditis elegans Hypothetical ... 28 5.5
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 28 7.3
Z81526-2|CAB04265.1| 229|Caenorhabditis elegans Hypothetical pr... 28 7.3
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 28 7.3
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 7.3
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 7.3
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 7.3
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 7.3
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 7.3
AL110478-8|CAB54342.2| 138|Caenorhabditis elegans Hypothetical ... 27 9.7
>U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical
protein F38A5.2a protein.
Length = 452
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +1
Query: 523 VYLIGTAHFSLQSQEDVSRVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNIN 690
+YLIGTAHFS +SQEDVS I+ V+P V +ELC R +I+ +DE +L EAK++N
Sbjct: 158 IYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLN 213
>U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical
protein F38A5.2b protein.
Length = 450
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +1
Query: 523 VYLIGTAHFSLQSQEDVSRVIQEVKPHIVTVELCVQRTNILLLDEEVILREAKNIN 690
+YLIGTAHFS +SQEDVS I+ V+P V +ELC R +I+ +DE +L EAK++N
Sbjct: 156 IYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLN 211
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 31.1 bits (67), Expect = 0.79
Identities = 36/154 (23%), Positives = 57/154 (37%)
Frame = +1
Query: 148 LEEMDAADRLLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKIN 327
+E + +D L++N E S+ A + N L I A + +A +
Sbjct: 490 VENPEISDFLVENQEETEEKVSEAAEKAENPMKLAEIDENSENLDISAAENAENAENHVT 549
Query: 328 ENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDA 507
ENS + P E E+P ++I S+P E P E T+
Sbjct: 550 AVAESENSENFSSESENPAENDENPEISKIMTSSPPGTPESEPIADDSESEDEKSTIR-- 607
Query: 508 PDGGKVYLIGTAHFSLQSQEDVSRVIQEVKPHIV 609
Y+ SLQ+ D S VI+E + +V
Sbjct: 608 ------YIPSKNSESLQNSMDSSDVIEEEEVKLV 635
>AF002196-3|AAP68957.1| 916|Caenorhabditis elegans Hypothetical
protein C09D4.4c protein.
Length = 916
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +1
Query: 295 DGGGDASIKINENMPGENSGKPKFVTSTPDEKKESP--SENQIADSNPECDM---EGVPE 459
DGGG +K N EN+ P+F + D ESP S IA +P + E
Sbjct: 455 DGGGGLLLKNIPNSQ-ENNFSPEFPGPSRDTATESPSCSSEPIASPSPSSEFGRCSAAGE 513
Query: 460 LPLDEGLP 483
L D+G+P
Sbjct: 514 LFQDDGIP 521
>AF002196-2|AAP68956.1| 915|Caenorhabditis elegans Hypothetical
protein C09D4.4b protein.
Length = 915
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +1
Query: 295 DGGGDASIKINENMPGENSGKPKFVTSTPDEKKESP--SENQIADSNPECDM---EGVPE 459
DGGG +K N EN+ P+F + D ESP S IA +P + E
Sbjct: 454 DGGGGLLLKNIPNSQ-ENNFSPEFPGPSRDTATESPSCSSEPIASPSPSSEFGRCSAAGE 512
Query: 460 LPLDEGLP 483
L D+G+P
Sbjct: 513 LFQDDGIP 520
>AF002196-1|AAP68955.1| 913|Caenorhabditis elegans Hypothetical
protein C09D4.4a protein.
Length = 913
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +1
Query: 295 DGGGDASIKINENMPGENSGKPKFVTSTPDEKKESP--SENQIADSNPECDM---EGVPE 459
DGGG +K N EN+ P+F + D ESP S IA +P + E
Sbjct: 452 DGGGGLLLKNIPNSQ-ENNFSPEFPGPSRDTATESPSCSSEPIASPSPSSEFGRCSAAGE 510
Query: 460 LPLDEGLP 483
L D+G+P
Sbjct: 511 LFQDDGIP 518
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 292 EDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLD 471
E G G+A + + + GE+S TS PD SP+ + A P P+ +
Sbjct: 1266 EGGSGEAGVPESPDGSGESS------TSAPDGV--SPTSSATAPEVPTTSASSTPDAVEE 1317
Query: 472 EGLPST 489
G+PST
Sbjct: 1318 SGIPST 1323
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 283 IKAEDGGGDASIKINENMPGENSGKPK--FVTSTPDEKKESPSENQIADSNPECDM 444
++A+D GDA + E+S PK V+ PDE E ++ + D + ++
Sbjct: 641 VQAQDTDGDAQVADENAQNDEDSTSPKEESVSPKPDETHEEDADEEPVDEEMDTEV 696
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 382 DEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLD 504
DE SP E ++ E E E P+DE + + V V D
Sbjct: 660 DEDSTSPKEESVSPKPDETHEEDADEEPVDEEMDTEVVVRD 700
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +1
Query: 286 KAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELP 465
K+ D D+++ + G++ KPK +KKE+P Q+ + PE + + E+
Sbjct: 12544 KSVDEVDDSTVLEEKKDDGDDKSKPK-TKKKIIKKKETPESEQVTAAEPE--QQKISEVD 12600
Query: 466 LDEGLPSTVTVLDAPDGGK 522
+ + V PD K
Sbjct: 12601 VQSVAETEVGAKKKPDAEK 12619
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +1
Query: 286 KAEDGGGDASIKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELP 465
K+ D D+++ + G++ KPK +KKE+P Q+ + PE + + E+
Sbjct: 12544 KSVDEVDDSTVLEEKKDDGDDKSKPK-TKKKIIKKKETPESEQVTAAEPE--QQKISEVD 12600
Query: 466 LDEGLPSTVTVLDAPDGGK 522
+ + V PD K
Sbjct: 12601 VQSVAETEVGAKKKPDAEK 12619
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.3 bits (60), Expect = 5.5
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Frame = +1
Query: 205 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENS-----GKPKFV 369
D DG+ P P K D C A G+ + PG G P V
Sbjct: 513 DGRDGVNGLPGAPGTKGDRGGTCSAC--APGTKGEKGLPGYSGQPGPQGDRGLPGMPGPV 570
Query: 370 TSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDG 516
D+ P+ + P D G P LP +G P+ +T+ P G
Sbjct: 571 GDAGDDGLPGPAGRPGSPGPPGQD--GFPGLPGQKGEPTQLTLRPGPPG 617
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 5.5
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Frame = +1
Query: 205 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENS-----GKPKFV 369
D DG+ P P K D C A G+ + PG G P V
Sbjct: 512 DGRDGVNGLPGAPGTKGDRGGTCSAC--APGTKGEKGLPGYSGQPGPQGDRGLPGMPGPV 569
Query: 370 TSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDG 516
D+ P+ + P D G P LP +G P+ +T+ P G
Sbjct: 570 GDAGDDGLPGPAGRPGSPGPPGQD--GFPGLPGQKGEPTQLTLRPGPPG 616
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.3 bits (60), Expect = 5.5
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Frame = +1
Query: 205 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENS-----GKPKFV 369
D DG+ P P K D C A G+ + PG G P V
Sbjct: 512 DGRDGVNGLPGAPGTKGDRGGTCSAC--APGTKGEKGLPGYSGQPGPQGDRGLPGMPGPV 569
Query: 370 TSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDG 516
D+ P+ + P D G P LP +G P+ +T+ P G
Sbjct: 570 GDAGDDGLPGPAGRPGSPGPPGQD--GFPGLPGQKGEPTQLTLRPGPPG 616
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.3 bits (60), Expect = 5.5
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Frame = +1
Query: 205 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENS-----GKPKFV 369
D DG+ P P K D C A G+ + PG G P V
Sbjct: 513 DGRDGVNGLPGAPGTKGDRGGTCSAC--APGTKGEKGLPGYSGQPGPQGDRGLPGMPGPV 570
Query: 370 TSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDG 516
D+ P+ + P D G P LP +G P+ +T+ P G
Sbjct: 571 GDAGDDGLPGPAGRPGSPGPPGQD--GFPGLPGQKGEPTQLTLRPGPPG 617
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 28.3 bits (60), Expect = 5.5
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Frame = +1
Query: 205 DNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKINENMPGENS-----GKPKFV 369
D DG+ P P K D C A G+ + PG G P V
Sbjct: 549 DGRDGVNGLPGAPGTKGDRGGTCSAC--APGTKGEKGLPGYSGQPGPQGDRGLPGMPGPV 606
Query: 370 TSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLPSTVTVLDAPDG 516
D+ P+ + P D G P LP +G P+ +T+ P G
Sbjct: 607 GDAGDDGLPGPAGRPGSPGPPGQD--GFPGLPGQKGEPTQLTLRPGPPG 653
>AF000299-7|AAC47982.1| 168|Caenorhabditis elegans Hypothetical
protein E03H12.7 protein.
Length = 168
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Frame = +1
Query: 286 KAEDGGGDASIKINENMPGENSGKPKFVTSTP--------DEKKESPSENQIADSNPECD 441
K + S K++ P +++ KP TP DEKKE P +++ +P D
Sbjct: 30 KKKPSNASPSKKMSSAEPAKSAIKPPITDPTPSALAKVGSDEKKEEPKDDKGDTKSPAPD 89
Query: 442 MEGVPELPLDE 474
+ P+D+
Sbjct: 90 GDAAAAKPVDQ 100
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 27.9 bits (59), Expect = 7.3
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Frame = +1
Query: 136 GNRYLEEMDAADRLLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDAS 315
GN + + + D + + + +P + + F +KRD + Q KAE G +
Sbjct: 13 GNSTVYDTNGNDEIKKEVKDEPMASDSEVPFGE---LMKRDKKEKKQKKRKAESGSDEDD 69
Query: 316 IKINENMPGENSGKPKFVTS------TPDEKKESPSENQIADSNPECDME 447
K + +GK K V S P++KK + + A + E D E
Sbjct: 70 YKPEKRKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKAQESSEDDDE 119
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 27.9 bits (59), Expect = 7.3
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Frame = +1
Query: 136 GNRYLEEMDAADRLLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDAS 315
GN + + + D + + + +P + + F +KRD + Q KAE G +
Sbjct: 13 GNSTVYDTNGNDEIKKEVKDEPMASDSEVPFGE---LMKRDKKEKKQKKRKAESGSDEDD 69
Query: 316 IKINENMPGENSGKPKFVTS------TPDEKKESPSENQIADSNPECDME 447
K + +GK K V S P++KK + + A + E D E
Sbjct: 70 YKPEKRKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKAQESSEDDDE 119
>Z82078-2|CAD54160.1| 714|Caenorhabditis elegans Hypothetical
protein W09D6.1b protein.
Length = 714
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 376 TPDEKKESPSENQIA-DSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGKVYLIGTAHFS 552
TPDE + P + Q + D ++ P + E LPS ++L A ++ L+G +HF
Sbjct: 187 TPDEYRSEPHKLQKSIDKFQPTVVQLTPTV--FEMLPSADSLLSATSSLRILLLGGSHFP 244
Query: 553 LQS 561
+ S
Sbjct: 245 ISS 247
>Z82078-1|CAB04944.2| 707|Caenorhabditis elegans Hypothetical
protein W09D6.1a protein.
Length = 707
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 376 TPDEKKESPSENQIA-DSNPECDMEGVPELPLDEGLPSTVTVLDAPDGGKVYLIGTAHFS 552
TPDE + P + Q + D ++ P + E LPS ++L A ++ L+G +HF
Sbjct: 187 TPDEYRSEPHKLQKSIDKFQPTVVQLTPTV--FEMLPSADSLLSATSSLRILLLGGSHFP 244
Query: 553 LQS 561
+ S
Sbjct: 245 ISS 247
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Frame = +1
Query: 151 EEMDAADRL-LQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDASIKIN 327
+++D A+ + + ND KP +N + ++ + + D+ + + + S +
Sbjct: 136 DKLDIAESISVSNDTEKPEENEEKVVGDEDEEDID-DVQEDDEDEAPKKKTKKAVSTSDD 194
Query: 328 ENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPELPLDEGLP 483
+++ ++S K V+ DEK+E +E+ + E ++E + D G P
Sbjct: 195 DDLHEDDSPKGGSVS---DEKEEPENEDDTEEPENEVEVESPVKEQADSGEP 243
>Z81526-2|CAB04265.1| 229|Caenorhabditis elegans Hypothetical
protein F33H2.3 protein.
Length = 229
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +1
Query: 316 IKINENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPECDMEGVPEL 462
+ I++N G+N+ V + PD KK + + N+++ N C ++ +P L
Sbjct: 68 LDISDNQLGDNASFDVLVKNAPDLKKITLASNKLSLDNLRC-LKVLPNL 115
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 27.9 bits (59), Expect = 7.3
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 6/110 (5%)
Frame = +1
Query: 136 GNRYLEEMDAADRLLQNDEHKPRDNSDGIIFAPPKPSVKRDITNECQLFIKAEDGGGDAS 315
GN + + + D + + + +P + + F +KRD + Q KAE G +
Sbjct: 13 GNSTVYDTNGNDEIKKEVKDEPMASDSEVPFGE---LMKRDKKEKKQKKRKAESGSDEDD 69
Query: 316 IKINENMPGENSGKPKFVTS------TPDEKKESPSENQIADSNPECDME 447
K + +GK K V S P++KK + + A + E D E
Sbjct: 70 YKPEKRKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKAQESSEDDDE 119
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +1
Query: 244 SVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFV------TSTPDEKKE 396
S K+ + ++ K E G + K+ GE KPKFV + P +KKE
Sbjct: 4493 SAKKSDIGQYRVTAKNEAGSATSDCKVTVTEQGEQPSKPKFVIPLKTGAALPGDKKE 4549
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +1
Query: 244 SVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFV------TSTPDEKKE 396
S K+ + ++ K E G + K+ GE KPKFV + P +KKE
Sbjct: 5133 SAKKSDIGQYRVTAKNEAGSATSDCKVTVTEQGEQPSKPKFVIPLKTGAALPGDKKE 5189
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +1
Query: 244 SVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFV------TSTPDEKKE 396
S K+ + ++ K E G + K+ GE KPKFV + P +KKE
Sbjct: 5133 SAKKSDIGQYRVTAKNEAGSATSDCKVTVTEQGEQPSKPKFVIPLKTGAALPGDKKE 5189
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +1
Query: 244 SVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFV------TSTPDEKKE 396
S K+ + ++ K E G + K+ GE KPKFV + P +KKE
Sbjct: 4493 SAKKSDIGQYRVTAKNEAGSATSDCKVTVTEQGEQPSKPKFVIPLKTGAALPGDKKE 4549
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +1
Query: 244 SVKRDITNECQLFIKAEDGGGDASIKINENMPGENSGKPKFV------TSTPDEKKE 396
S K+ + ++ K E G + K+ GE KPKFV + P +KKE
Sbjct: 5133 SAKKSDIGQYRVTAKNEAGSATSDCKVTVTEQGEQPSKPKFVIPLKTGAALPGDKKE 5189
>AL110478-8|CAB54342.2| 138|Caenorhabditis elegans Hypothetical
protein Y26D4A.3 protein.
Length = 138
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 325 NENMPGENSGKPKFVTSTPDEKKESPSENQIADSNPEC 438
NE P N+ P T+TP + S +E+ + SN EC
Sbjct: 24 NELYPQVNTEPPVSPTTTPRTETLSVTESAVTFSNQEC 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.313 0.135 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,396,238
Number of Sequences: 27780
Number of extensions: 286318
Number of successful extensions: 661
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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