Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f05
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    30   0.18 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   3.0  
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    26   3.0  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   5.2  
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    25   9.1  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   9.1  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   9.1  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = -1

Query: 242 DFQFEKLRHCHFTHERKNPPAQSCDCNDH---YLDFQCYTTNKVIGARS 105
           D  F    +CH  H  + P A  C   D+   YLD  C   N  IG R+
Sbjct: 175 DSVFVNTVYCHTCHLYRPPRASHCHLCDNCVEYLDHHCIWLNTCIGRRN 223


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
 Frame = -1

Query: 431 IFSLTNCVIVTLLTHTNAKTRQSELRLQRSL-FRFTACH*QLSINTHKHXPPRVTSQT*N 255
           IFS+       +  H++   +     L  +L  +F      L++   +    R+  +   
Sbjct: 400 IFSVLFSEYFMIFPHSDQSLQNKVFELHSTLAIKFDELFRLLNLENEESVEWRLIKKVFE 459

Query: 254 SKL-IDFQFEKLRHCHFTHERKNPPAQSCDCNDHYLDFQCYTTN 126
            +L +D    K  +CH+    + PP      ++ + +F  Y  N
Sbjct: 460 YRLNLDLYILKQFYCHYLDRNRKPPLNIKSVSESFKNFWVYLQN 503


>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 229 SN*KSINFEFYVCEVTRGGWCLC 297
           SN K   F+ Y  E+  G WC+C
Sbjct: 196 SNEKQRLFDDYEKEIAGGSWCIC 218


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 148 IFNVTQPTKLLAHEVSTVLFEKRAINYVTQTKLSCVIKTGDCNGVSV 8
           I+N   PTK+L  E+++V+ E      V    +S ++   D  G S+
Sbjct: 100 IYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEKGPSL 146


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 233 FEKLRHCHFTHERKNPPAQSCDCNDHYLDFQCYTTNKVIGARSEH 99
           FE+LR  +     K P       ND  LD      N++I  ++EH
Sbjct: 241 FEELRRFNLNEVYKQPENTKSIPNDSKLDNFDRDKNQIINDKAEH 285


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 168 LQRSLFRFSMLHNQQSYWRTK*ALCYLKSARLIMSLKLNCHVSLRQAIAT 19
           +Q + F+  +LH   +YWR K   C  K   L+ +  L  H+  R  ++T
Sbjct: 382 IQSTGFKSQLLHEAANYWR-KQQSCEAK--LLLCTRSLLAHLDERAPVST 428


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 315 TTVNKHAQTPXTSSHFANIKFKINRFSI*ETASLSLHTRTQKP 187
           +T+ +   T  TS+ FAN K +    +I  T    LHT  + P
Sbjct: 504 STLQEETATGTTSTTFANAKRRPEDSNISPTNPKKLHTLPRSP 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,792
Number of Sequences: 5004
Number of extensions: 38039
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)