Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f04
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    28   1.1  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    27   2.6  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.4  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    26   6.0  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   6.0  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 254 DGAIKQLKYDVAGMENHRTKQHG 322
           DG  ++LKY   G+ENH + Q G
Sbjct: 679 DGLPQRLKYSAVGLENHLSIQQG 701


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 285 LRVWKITERNNMVIQH*SILDDLPVSLSMKVTTPSTL 395
           +++WK+ E+N  V+   ++ D     +   +TTPS L
Sbjct: 115 IKLWKLYEKNLKVVAENNLSDSFHSPMQGPLTTPSQL 151


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 510 SRFKRRTNQRQRAVKR--PHLKSMKQTISRQSMPLKHSTRKDSLHP 641
           +R KRRT QRQ  +K     L+ M+ T+ R  +P  +  + D +HP
Sbjct: 42  ARPKRRTGQRQMYIKSLVSRLEQMESTL-RSVIP-NYDQQPDIIHP 85


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 657 FPVPKMDAASPFLLSV 610
           FP+PK+DA+ PF L +
Sbjct: 388 FPLPKVDASKPFRLQL 403


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 558 PHLKSMKQTISRQSMPLKHSTRKDSLHPFLGLEKRNQFFKCI 683
           PHL      ++ QS    HS  ++SLHP +   + +  F  +
Sbjct: 361 PHLDFSDSAVTNQS----HSQSQNSLHPLISQSETHSIFSAL 398


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 558 PHLKSMKQTISRQSMPLKHSTRKDS 632
           PH+   +  ISRQ MPL H+T + S
Sbjct: 505 PHMSDSR--ISRQHMPLTHTTYEPS 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,634
Number of Sequences: 5004
Number of extensions: 59656
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)