Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f04
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    28   6.2  
01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605...    28   6.2  

>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/97 (18%), Positives = 38/97 (39%)
 Frame = +2

Query: 89  MITVSCYKFHRITSRFVRLWRKVQTVSDYLTFPLAFLCCQGVGMPLSEATSSDIKDGAIK 268
           +I   C+      + ++R    +  + D  T  +  +  +G G+P+  A ++D + G   
Sbjct: 232 LIKSQCFSTEGTANFYMRPIEGLTVLVDMDTAEVLHVSDRGAGIPIPAAANTDYRHGHSA 291

Query: 269 QLKYDVAGMENHRTKQHGHPALIDPGRSSGEPLNEGH 379
               +      H  +    P++  P    G  L +GH
Sbjct: 292 PTPAEAQAQGRHGYQTVRVPSMEPPAGGPGFELVDGH 328


>01_06_1105 -
           34559694-34559852,34560298-34560312,34560451-34560522,
           34560695-34561549
          Length = 366

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +2

Query: 212 VGMPLSEATSSDIKDGA--IKQLKYDVAGMENHRTKQHGHPALIDPGRSSGEPLNEGHYT 385
           VG  ++   + D+  G+  I+Q K  +A  + H   Q G      P R   +PLN G   
Sbjct: 164 VGRGVTATGTVDLAPGSHWIEQYKQQIASTDAHHHGQQGVQGAYFPNRLVPQPLNVGPGA 223

Query: 386 IDFAPAPGDNEETA 427
           I   P+  D + ++
Sbjct: 224 I-LEPSYSDGQTSS 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,047,412
Number of Sequences: 37544
Number of extensions: 398797
Number of successful extensions: 921
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)