Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f04
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   3.2  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   3.2  
Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 664 FLFSSPKNGCSESFLVECFNGIDCREIVCFIDFKC 560
           F+ ++ +  C E   V+C  G +CR  VC   + C
Sbjct: 575 FVMTAFEGKCDECLHVQCRYGEECRSGVCVCSYNC 609


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 664 FLFSSPKNGCSESFLVECFNGIDCREIVCFIDFKC 560
           F+ ++ +  C E   V+C  G +CR  VC   + C
Sbjct: 583 FVMTAFEGKCDECLHVQCRYGEECRSGVCVCSYNC 617


>Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical
           protein F28H7.11 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 469 LFVYDHLPKVLTPHGCLLIISRCWGKVDGVVTFIERLTGRSSRID 335
           LF ++ L +   PHG ++ +  C G +  + TFI     R +R++
Sbjct: 117 LFCHNFLERYFLPHGIVVSVIYCLGLM-SLWTFIAGFLSRKNRVE 160


>AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical
           protein Y105E8A.9 protein.
          Length = 829

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -2

Query: 261 APSLISEEVASESGIP 214
           APS+I EEV++ESG P
Sbjct: 616 APSMIDEEVSAESGAP 631


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 416  EETAMRCQDFWEMIINEKQLE 478
            EE A RC D WE+I  E++ E
Sbjct: 2931 EEAARRCMDRWEVIEREQRWE 2951


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,711
Number of Sequences: 27780
Number of extensions: 348777
Number of successful extensions: 866
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)