Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f02
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    24   7.2  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    24   9.5  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    24   9.5  
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    24   9.5  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 243 TSMGSSNLTSGGP*TCLHS*TKQNYNRHMLNSAP 344
           T+   SN T GGP T  +S    N+NR +    P
Sbjct: 468 TTGDPSNSTYGGPQTFPNSGNNPNFNRGIAGIVP 501


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 60  PLKATSLGRKKKSPRG*IPPPCL 128
           PL  + +GR+K  P   +PPP +
Sbjct: 551 PLPHSKVGRRKNIPAITVPPPSI 573


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 298 LCKQVHGPPDVKLLEPIDVYNVNAVTYLEII 206
           L +   GP  + LLEP+    +N++  L+II
Sbjct: 18  LAQAGRGPEALALLEPLKSTPINSLELLDII 48


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -3

Query: 229 AVTYLEIIILRFQSIVQRPPHPSNRNALLLHGRNRQGGGIYPRGLFFFLPKLVALRGYSS 50
           AV    ++++R +  V R PH S  N +L   R +   G Y +G   FLP L+ +   + 
Sbjct: 201 AVNMYPLLVIRTRLQVMRSPHRSIMNLVLQTWRLQGILGFY-KG---FLPHLLRVVPQTC 256

Query: 49  VT 44
           +T
Sbjct: 257 IT 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,315,650
Number of Sequences: 5004
Number of extensions: 21331
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)