Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f02
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         31   0.43 
06_01_0717 - 5219848-5220178,5220268-5220617,5221807-5221982,522...    28   3.0  
08_02_1367 + 26432425-26432622,26434071-26434162,26434337-264344...    27   7.0  
06_03_0505 + 21545547-21545813,21546075-21546167,21546535-215467...    27   7.0  
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575...    27   7.0  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 169 HPSNRNALLLHGRNRQGGGIYPRGLFFF 86
           H ++    LL GR R GGG + RGLF F
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVF 309


>06_01_0717 -
           5219848-5220178,5220268-5220617,5221807-5221982,
           5222065-5222302,5224492-5224657,5224792-5225159,
           5225261-5225436,5227742-5227976,5228242-5228493,
           5228513-5228848
          Length = 875

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 274 PDVKLLEPIDVYNVNAVTYLEIIILRFQSIVQRPPHPSNRNALLLHGR 131
           P +  +E   V  ++ V +L +   RF  +   P  P NR   + HG+
Sbjct: 499 PSIARMEKSVVEWIHRVDFLILCTGRFSGVAHTPTFPPNRGPEVFHGQ 546


>08_02_1367 +
           26432425-26432622,26434071-26434162,26434337-26434403,
           26434519-26434638,26434792-26435023,26435525-26435606,
           26435985-26436117,26436332-26436537,26436633-26436758,
           26437208-26437907
          Length = 651

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 125 AGWWYLPARTFFFPT*AGSLERLFQRN 45
           + WWY    +F  P    SL+RL+QR+
Sbjct: 503 SNWWYADQGSFEEPEGRESLQRLWQRH 529


>06_03_0505 +
           21545547-21545813,21546075-21546167,21546535-21546747,
           21548933-21549124,21549217-21550197
          Length = 581

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 205 ILRFQSIVQRPPHPSNRNALLLHGRNRQGGG 113
           IL    +   PP  S+R   LL+ +NR GGG
Sbjct: 353 ILGRAGVTPPPPATSDRRIELLNTQNRMGGG 383


>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
            27757626-27758249,27759048-27759596,27759665-27760372,
            27760449-27760658,27761266-27761421,27761524-27761664,
            27762015-27762101,27762209-27762309,27763071-27763293,
            27763384-27763548,27763621-27763713,27763801-27764292,
            27764729-27764805,27765184-27765681,27765818-27766046
          Length = 1855

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 136  GRNRQGGGIYPRGLFFFLPKLVALRGYSSVTLTS 35
            GR+R  GG  PRG+    PK +  RGYS+  ++S
Sbjct: 1626 GRSRSRGGKVPRGI-SSSPK-IEFRGYSASAVSS 1657


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,856,699
Number of Sequences: 37544
Number of extensions: 153339
Number of successful extensions: 305
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)