Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1f02
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   0.31 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   0.41 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.7  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -3

Query: 235 VNAVTYLEIIILRFQSIVQRPPHPSNRNALLLHGRN 128
           +N+V Y+E +     ++ ++ P  +NR +++ H  N
Sbjct: 89  INSVVYIEQLTKLNNAVEEKRPELTNRKSVVFHHDN 124


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -3

Query: 235 VNAVTYLEIIILRFQSIVQRPPHPSNRNALLLHGRN 128
           +N+V Y+E +     ++ ++ P  +NR  ++ H  N
Sbjct: 211 INSVVYIEQLTKLNNAVEEKRPELTNRKGVVFHHDN 246


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 193 QSIVQRPPHPSN 158
           Q +VQ PP P N
Sbjct: 901 QLLVQEPPQPPN 912


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 193 QSIVQRPPHPSN 158
           Q +VQ PP P N
Sbjct: 897 QLLVQEPPQPPN 908


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,356
Number of Sequences: 438
Number of extensions: 1618
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)