Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e24
         (192 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0087 + 623174-623421,623576-623693,624266-624588,625267-62...    26   4.9  
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044     25   8.5  
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...    25   8.5  

>02_01_0087 +
           623174-623421,623576-623693,624266-624588,625267-625551,
           625643-625823,625964-626119
          Length = 436

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 118 VLFIIFIDFHLFVKITLLINYMVVFASGCTVDFSVTT 8
           +L ++ +D   F+  + L+N+ ++F   CT+  S+ T
Sbjct: 110 ILALLHLDTPWFMLFSQLVNWFMLFCITCTLSNSMET 146


>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 185 FDIHFIEVMFEISNSVINANTVRFIYNFYRLSFIRK 78
           + + F+   F I+ S+ N+NT   I NF     +RK
Sbjct: 89  YKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRK 124


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 185 FDIHFIEVMFEISNSVINANTVRFIYNFYRLSFIRK 78
           + + F+   F I+ S+ N+NT   I NF     +RK
Sbjct: 82  YKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRK 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,821
Number of Sequences: 37544
Number of extensions: 38841
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)