Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e24
         (192 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065903-1|BAC06118.1|  313|Homo sapiens seven transmembrane hel...    28   4.6  
AB065886-1|BAC06103.1|  313|Homo sapiens seven transmembrane hel...    28   4.6  

>AB065903-1|BAC06118.1|  313|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 130 QIQFVLFIIFIDFHLFV 80
           ++Q VLF+IF+ F+LF+
Sbjct: 22  EVQLVLFVIFLSFYLFI 38


>AB065886-1|BAC06103.1|  313|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -3

Query: 130 QIQFVLFIIFIDFHLFV 80
           ++Q VLF+IF+ F+LF+
Sbjct: 22  EVQLVLFVIFLSFYLFI 38


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,917,314
Number of Sequences: 237096
Number of extensions: 234893
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 76,859,062
effective HSP length: 43
effective length of database: 66,663,934
effective search space used: 1333278680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)