Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e24
         (192 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   1.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    19   4.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    19   7.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    19   7.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    19   7.1  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    18   9.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    18   9.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    18   9.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    18   9.4  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 128 NTVRFIYNFYRLSFIRKNNSVNKLYGSL 45
           NT+  IY+   L     N    +LY  L
Sbjct: 14  NTLHIIYSVAGLKIFEANPDTKRLYDDL 41


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
          isomerase protein.
          Length = 247

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 2  FVGGNTKIN 28
          FVGGN K+N
Sbjct: 6  FVGGNWKMN 14


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 41  SKDYHIIY*QSYFYE*MKVYKNY 109
           + +Y+  Y  +Y     K+YKNY
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 41  SKDYHIIY*QSYFYE*MKVYKNY 109
           + +Y+  Y  +Y     K+YKNY
Sbjct: 98  NNNYNNNYNNNYNNNYKKLYKNY 120


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 141 CNKCKY 124
           C+KCKY
Sbjct: 43  CHKCKY 48


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 124 QFVLFIIFIDFHLFVKITLLINYMVV 47
           +  +FI+     +F  +T+LI+Y+ +
Sbjct: 75  KLAVFIVAGAVGVFSVLTILISYIYI 100


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -1

Query: 144 QCNKCKYS 121
           +C KC YS
Sbjct: 18  KCEKCSYS 25


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 137 INANTVRFIYNFYRLSF 87
           IN+    FIY FY   F
Sbjct: 350 INSAINPFIYAFYSADF 366


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -2

Query: 134 NANTVRFIYNFYRLSFIRKNNSVNKLY 54
           N N     YN Y       NN+  KLY
Sbjct: 326 NYNNYNNNYNNYNNYNNNYNNNYKKLY 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,428
Number of Sequences: 438
Number of extensions: 694
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)