Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1e23
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 59 8e-10
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 54 2e-08
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 51 2e-07
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 44 2e-05
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 42 1e-04
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 40 4e-04
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 40 5e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 39 7e-04
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 39 7e-04
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 37 0.003
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 36 0.005
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 36 0.008
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 35 0.014
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 34 0.019
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 34 0.025
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 34 0.025
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 33 0.033
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 33 0.043
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.057
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 32 0.076
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.13
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 31 0.18
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 31 0.18
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.23
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 30 0.31
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.40
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 29 0.54
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 29 0.71
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 28 1.6
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 28 1.6
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.2
SPBC216.06c |swi1||replication fork protection complex subunit S... 27 2.9
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 3.8
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 27 3.8
SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit T... 27 3.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 3.8
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.0
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 6.6
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 26 6.6
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 8.7
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 25 8.7
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 8.7
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 58.8 bits (136), Expect = 8e-10
Identities = 39/118 (33%), Positives = 55/118 (46%)
Frame = +3
Query: 171 ELDEESYIQNETSLINIDSSLETTSINNIYSIDNSHTLEKKGNKKKESTSTKKQNSHSTS 350
E DEE+Y N ++ L S + ++ ++ + KK + S S K+ T
Sbjct: 14 EDDEENY-NNNLDDEKMEVLLIPQSNSTTFASSDATQMYKKS--RISSNSENKKQIPDTK 70
Query: 351 LRKPIIESSIKFGDCPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKKCPTCRRVL 524
+ K +CPIC E L P +T CGH YC +CL LK K CPTCR+ L
Sbjct: 71 TLLETFQKIKKTLECPICTEAL-QRPF-TTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 54.4 bits (125), Expect = 2e-08
Identities = 36/123 (29%), Positives = 57/123 (46%)
Frame = +3
Query: 177 DEESYIQNETSLINIDSSLETTSINNIYSIDNSHTLEKKGNKKKESTSTKKQNSHSTSLR 356
DE S N L+N S E +I+ + E+K N +++ + + + T+L
Sbjct: 1023 DEASQTTNVAELVNQKIS-EMNIPGHIHLLRELE--EEKSNTQRKIAHFESRRRYLTNLY 1079
Query: 357 KPIIESSIKFGDCPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKKCPTCRRVLKGNY 536
+ I+ + C IC + + + T CGH+YC CLE LK CP C+ L N
Sbjct: 1080 EHIVLKAESHQICIICRDIIKQGFI--TTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNN 1137
Query: 537 AYH 545
AY+
Sbjct: 1138 AYY 1140
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Frame = +3
Query: 201 ETSLINIDS-SLETTSINNIYSIDNSHTLEKKGNK---KKESTSTKKQNSHSTSLRKPII 368
E SL N++S + T+I+++ + + + + + K K ++T + +K ++
Sbjct: 136 ENSLTNVNSIHAQPTTISDMIDLTDETSYDPRKQKFEQGKNPSTTNAEIEKEEPSKKQVV 195
Query: 369 ESSIKFGD--CPICCEELGTNPLASTKCGHVYCLKCLERCLKT---EKKCPTCRRVLKGN 533
SS + D C IC + L+ T CGH++C C+ L T +KCP CRR + N
Sbjct: 196 PSSQRLADYKCVICLDS--PENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPN 253
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +3
Query: 390 DCPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKK-------CPTCRRVLKGNYAYHP 548
+CPICC E NPL C H C CL ++ +K+ C TCR+ Y P
Sbjct: 876 ECPICCNEPIQNPLL-LNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKP 934
Query: 549 LFLGNS 566
F+ N+
Sbjct: 935 FFVKNN 940
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 357 KPIIESSIKFGDCPICCEELGTNP-LASTK--CGHVYCLKCLERCLKTEKKCPTCRR 518
+P+ + CPIC +++ N +TK CGH++ CL++ L+ CP CR+
Sbjct: 95 EPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRK 151
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 363 IIESSIKFGDCPICCEELGTNPLAS--TKCGHVYCLKCLERCLKT 491
+ S + CP C EE P+A+ ++CGHVYC CL R ++T
Sbjct: 204 LCSSDFQLAACPFCLEE---KPVAARMSRCGHVYCFSCLLRFVET 245
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 390 DCPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKKCPTCR 515
+C IC L +P+ S CGH +C CL + L +CPTCR
Sbjct: 168 ECQICFGML-YDPVVSP-CGHTFCGPCLMQALTQSPQCPTCR 207
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 39.1 bits (87), Expect = 7e-04
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 393 CPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKKCPTCR 515
C +C E + A+T+CGH++C C+ + +CP CR
Sbjct: 256 CSLCMEFIHCP--AATECGHIFCWSCINGWTSKKSECPLCR 294
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 39.1 bits (87), Expect = 7e-04
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Frame = +3
Query: 393 CPICCEELGTNP------LASTKCGHVYCLKCLERCLKTEKK 500
CP C E LGT+ L +TKCGHVYC C + LKT K+
Sbjct: 189 CPRCQEPLGTSKSKEKSALWATKCGHVYCGSC-AKVLKTSKR 229
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 282 LEKKGNKKKESTSTKKQNSHSTSLRKPIIESSIKFGDCPICCEELGTNPLASTKCGHVYC 461
L K+ + ++ K STS + +++ C +C E + + S CGH +C
Sbjct: 592 LSKQDEEHEKEKRKLKDTGVSTSAEE--LKTFRAMCKCSVCNFERWKDRIISL-CGHGFC 648
Query: 462 LKCLERCLKT-EKKCPTCRR 518
+C+++ ++T +++CP C R
Sbjct: 649 YQCIQKRIETRQRRCPICGR 668
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 36.3 bits (80), Expect = 0.005
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 444 CGHVYCLKCLERCLKTEKKCPTCRRVLKGN 533
CGH+ CL L+ ++ CP CRR + GN
Sbjct: 328 CGHILHFHCLRNWLERQQTCPICRRSVIGN 357
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 35.5 bits (78), Expect = 0.008
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 363 IIESSIKFGDCPICCEEL-GTNPLASTKCGHVYCLKCL 473
++E I+ C +C +E GT+ T+CGHV C CL
Sbjct: 164 LLEFQIRKFQCNVCFDEFNGTDCFQLTRCGHVSCQSCL 201
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 399 ICCEELGTNPLASTKCGHVYCLKCLERCLKTEKKCPTCR 515
+ C E PL T C H +C C+ L+ CP CR
Sbjct: 30 LICHEYFRAPLI-TSCSHTFCSFCIRDYLREHPMCPACR 67
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 34.3 bits (75), Expect = 0.019
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 393 CPICCEELGTNPLAS---TKCGHVYCLKCLERCLKTEKKCPT--CRRVLKGNYAYHPLFL 557
C C EL ++ S KCGH++C C + K CP CR+ + + + PL+L
Sbjct: 147 CAKCGNELVSDEKKSIFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFIF-PLYL 205
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 33.9 bits (74), Expect = 0.025
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 390 DCPICCEEL--GTNPLASTKCGHVYCLKCLERCLKTEKKCPTCRRVL 524
+CPIC E + + C H +C E ++T +CPTC + +
Sbjct: 270 NCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTI 316
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 33.9 bits (74), Expect = 0.025
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +3
Query: 291 KGNKKKESTSTKKQNSHSTSLRKPIIESSIKFGDCPICCEELGTNPLAS 437
+ ++KK S + K+ + + S KP+ S++ +C E +GT+P+++
Sbjct: 15 RASEKKNSRTHNKKTNRNQSKEKPVSSRSVETPKNAVCLEPVGTDPVSN 63
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 33.5 bits (73), Expect = 0.033
Identities = 28/112 (25%), Positives = 50/112 (44%)
Frame = +3
Query: 150 ALADFIIELDEESYIQNETSLINIDSSLETTSINNIYSIDNSHTLEKKGNKKKESTSTKK 329
++ D L+E+ I TS+I++ + + + + LE+ + +ES K
Sbjct: 57 SVRDLRASLNEK--INQLTSIIDLTRE-QVLGLYRYFKWNRERLLERYIDAPEESLQ-KA 112
Query: 330 QNSHSTSLRKPIIESSIKFGDCPICCEELGTNPLASTKCGHVYCLKCLERCL 485
S S ++ ++ G C IC +E G P S +C H +CL C + L
Sbjct: 113 GVGLSGSKQREVVHHE---GTCEICYDE-GCLPFFSAECDHEFCLACYRQYL 160
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 33.1 bits (72), Expect = 0.043
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +3
Query: 393 CPICCEELGTNP----LASTKCGHVYCLKCLERCLKT-EKKCPT--CRRVLK 527
CP+C + NP L + +C H C C++R T +CPT C ++L+
Sbjct: 13 CPLCQADRYLNPNMKLLINPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 32.7 bits (71), Expect = 0.057
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Frame = +3
Query: 390 DCPIC--CEELGTNPLA-----STKCGHVYCLKCLERCLK--TEKKCPTCRRVLK 527
+C +C C + G +A +T CGH YC C+ LK CP C+ ++
Sbjct: 188 ECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRIR 242
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 32.3 bits (70), Expect = 0.076
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 17/127 (13%)
Frame = +3
Query: 225 SSLET-TSINNIYSIDNSHTLEKKGNKKKESTSTKKQNSHSTSLRKPIIESSIKF----- 386
S +ET T+ + + ++ SH L+ E +N T+L+ P S +F
Sbjct: 2 SEVETPTAASPTFPVETSHRLDTLHTSSTEQIIKDSENVVHTTLKLPTSTLSREFWMKDE 61
Query: 387 --GDCPICCEE--LGTNPLASTKCGHVYCLKCLE-------RCLKTEKKCPTCRRVLKGN 533
+C +C E L CG + C CL+ R + K C C +L N
Sbjct: 62 RTNNCSLCETEFTLFRRKHHCRICGKIICKYCLKEAPGFIFRLQGSIKVCRPCASILVNN 121
Query: 534 YAYHPLF 554
Y+ LF
Sbjct: 122 YSRSQLF 128
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 351 LRKPIIESSIKFGDCPICCEELGTNP-LASTKCGHVYCLKCLERCLKTEKKCPTCRRVLK 527
++KP E + G+C IC E N + C H + C++ L+ C CR +
Sbjct: 382 VQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVD 441
Query: 528 GN 533
N
Sbjct: 442 PN 443
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 438 TKCGHVYCLKCLERCLKTEKKCPTCR 515
T C H+Y +CL + ++T CP CR
Sbjct: 645 TPCHHLYHRQCLLQWMETRSICPVCR 670
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 405 CEELGTNPLASTKCGHVYCLKCLERC-LKTEKKCPTCRR 518
C++L N + C ++C +C++ L ++ +CP C R
Sbjct: 285 CKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCHR 323
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 30.7 bits (66), Expect = 0.23
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +3
Query: 390 DCPICCEELGTNPLASTKCGH-VYCLKCLERCLKTEKKCPTCRR-VLKGNYAYHPLFLGN 563
DC IC ++ G S CGH + C+ R + CP C+R V Y +H L
Sbjct: 20 DCVICLQKDGLRAQLS-PCGHDQFDYSCICRWMDQSLTCPICKRHVDCVFYGFHGSSLYK 78
Query: 564 S*YYNSL 584
Y SL
Sbjct: 79 KWYTQSL 85
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 30.3 bits (65), Expect = 0.31
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 429 LASTKCGHVYCLKCLERCLKTEKKCPTCR 515
+A CGH + CLE + CP CR
Sbjct: 51 IAKIPCGHYFHNHCLESWCRVANTCPLCR 79
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.9 bits (64), Expect = 0.40
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 390 DCPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKK-CPTCR 515
+C IC + P+ C HV+CL CL K + CP CR
Sbjct: 359 ECAIC-SNVAYKPVR-LGCSHVFCLHCLIILQKQKVDFCPLCR 399
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 29.5 bits (63), Expect = 0.54
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +3
Query: 387 GDCPICCEELGTNPLASTKCGHVYCLKCLERCLKT---EKKCPTCRR 518
G CP C P+ KC H++ C++ L T + +CP R+
Sbjct: 33 GCCPQCTSPGDNCPIVWGKCKHIFHAHCIQNWLATSGSQGQCPMDRQ 79
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 29.1 bits (62), Expect = 0.71
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 102 DEIIDLTDSFTLANHCALADFIIELDEESYIQNETSLINIDS-SLETTSINNIYSIDNSH 278
DE+++L D N + F+ D+E +++ E L+ ID+ S+ D ++
Sbjct: 110 DELLNLLDVVYAPNLVNILAFLRNFDQEKHLK-EIGLLIIDNLSMPIQLAYPTSPEDYAY 168
Query: 279 TLEKKGNKKKESTSTKKQNSHSTSLRK 359
++ KK S S Q ++ +L K
Sbjct: 169 LRLRRNTSKKSSLSDSSQKENTLTLNK 195
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +3
Query: 318 STKKQNSHSTSLRKPIIESSIKFG--DCPICCEELGTNPLASTKCGHVYCLKCLERCLKT 491
S K+ SH + E+ + G C +C + L CGH +C C+E +
Sbjct: 612 SYNKKESHLINQAYETQEAQVYKGMLKCSVCNFSNWKSKLIPN-CGHAFCSNCMEPFYEH 670
Query: 492 E-KKCPTC 512
+ CP C
Sbjct: 671 KTSTCPQC 678
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 588 ILDYYNITNFPKIEDDMHNSLSIL 517
+LD Y+I+N PK E ++ LSIL
Sbjct: 292 LLDQYSISNIPKDESKRNSHLSIL 315
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 171 ELDEESYIQNETSLINIDSSLETTSINNIYS--IDNSHTLEKKGNKKKESTSTKKQNSHS 344
E D+ I++ L + +++++T+ N + + +EK + +STS+ SHS
Sbjct: 708 EADKNPEIKSSAPLASSEANVDTSKQTNATEPEVVDKTKVEKLKASEGKSTSSLSSPSHS 767
Query: 345 TSLRKPII 368
TS ++ ++
Sbjct: 768 TSSKRDLL 775
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +3
Query: 75 KKQSTMSFRDEIIDLTDSFTLANHCALADFIIELDEES-----YIQNETSLINIDSSLET 239
+K+ M + IID T NH A +I++ D++S + Q+E +L ++ +
Sbjct: 884 RKRKKMKTNETIIDHTTRKKKENHLRSAKYIVDSDDDSETDIAFFQSEAALREKNAQKAS 943
Query: 240 TSINNIYSIDNSHTLEKKGNKKKESTS 320
I ++ L++ + S+S
Sbjct: 944 ALFKRIDDLEMEGKLQEIEQLSENSSS 970
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 456 YCLKCLERCLKTEKKCPTCRRVLKGNYAYHPLFLGN 563
YCLKC + C C+R + Y +H + GN
Sbjct: 401 YCLKCFQVKPPRSYHCGACKRCI-NRYDHHCPWTGN 435
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 207 SLINIDSSLETTSINNIYSIDNSHTLEKKGNKKKESTSTKK 329
S+ IDS E +++ ++ + +S + EKKG S + KK
Sbjct: 4 SITEIDSISEESNVESVSHLQHSPSFEKKGADFSISLNEKK 44
>SPBC32F12.15 |tfb5||transcription factor TFIIH complex subunit Tfb5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 68
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 165 IIELDEESYIQNETSLINIDSSLETTSINNIYSID 269
I E+DEE + NE+ L + + LE N Y ++
Sbjct: 33 IEEIDEERLLVNESRLEQVKAELERRLEENTYQVE 67
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/38 (23%), Positives = 23/38 (60%)
Frame = +3
Query: 234 ETTSINNIYSIDNSHTLEKKGNKKKESTSTKKQNSHST 347
+ + + ++ + ++ + KG +KK + TKK+N H++
Sbjct: 579 QASYVKDLLTAFENYKVSPKGRRKKITKHTKKKNKHAS 616
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 171 ELDEESYIQNETSLINIDSSLETTSINNIYSIDNSHTLEKK-GNKKKESTSTKKQNSHST 347
E D S ++ + I+ + + T NN+ + TLE K GNK ++ + S
Sbjct: 37 EPDYNSPVKQAAASISALQTQDDTLFNNV----DERTLENKDGNKSDDANFDQVSGIPSG 92
Query: 348 SLRKPIIESS 377
SL PI+ S+
Sbjct: 93 SLEIPILNSA 102
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 6.6
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Frame = +3
Query: 186 SYIQNETSLINIDSSLETT-SINNIYSIDNSHTLEKKGNKKKESTSTKKQNSHSTSLRKP 362
S+ T N DS+ ++ S + I + +G+K+K +T + S +L +P
Sbjct: 210 SFANISTQDFNSDSAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRP 269
Query: 363 IIESSIKFG--------DCPICCEELGTNPLASTKCGH----VYCLKCLERCLKTEKKCP 506
I++ G D I LG + + + G + + LER L KK P
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVP 329
Query: 507 TCR 515
T R
Sbjct: 330 TTR 332
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 444 CGHVYCLKCLERCLKTEKKCPTCRR 518
C H + C+ R L T CP R
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPLDNR 98
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/79 (21%), Positives = 31/79 (39%)
Frame = +3
Query: 195 QNETSLINIDSSLETTSINNIYSIDNSHTLEKKGNKKKESTSTKKQNSHSTSLRKPIIES 374
+NE +++I +E + ++ N T+E N N+ S S R+ ++ S
Sbjct: 259 ENEVKMLSIAYEIENPETGVLAALTNDGTIEMFENPWLSKLRQNGTNASSLSHRRKLLTS 318
Query: 375 SIKFGDCPICCEELGTNPL 431
C C G P+
Sbjct: 319 HSTLKIC--FCRSRGDPPI 335
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +3
Query: 207 SLINIDSSLETTSINNIYSIDNSHTLEKKGNKKKESTSTKKQNSHSTSLRK 359
S + S L ++ +N+ + N HT N + + +SHS+ L K
Sbjct: 36 STYQLQSQLSHSATSNLSTAANFHTRPPIANDENAQNLSTVNSSHSSELSK 86
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +3
Query: 297 NKKKESTSTKKQNSHSTSLRKPIIESS---IKFGDCPICCEELGTNPLASTKCGHVYCLK 467
+K+ E+ K++ + + I+ + ++ C C +L P+ +CGH Y +
Sbjct: 836 SKQNEAIEMGKRDIEEITSQLSILRTRAFVVQESKCSTCGIDLEL-PMVHFRCGHSYHQR 894
Query: 468 CLE-RCLK 488
C+E C++
Sbjct: 895 CVEDECIR 902
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,960
Number of Sequences: 5004
Number of extensions: 62798
Number of successful extensions: 253
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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