Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e20
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell m...    27   9.8  
U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell m...    27   9.8  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance prot...    27   9.8  

>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
            Y16B4A.2 protein.
          Length = 2105

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 682  YITSDLY-GGEQYFRFFCIPGCLEISVSGQGSFGITISYKRPWSGVFLPNVVV 527
            Y TSD Y  GE Y   + +PG   + V G  S  I I+YK    GV + N V+
Sbjct: 1683 YTTSDFYTTGESYAGVY-LPGLSALLVQGIKSGDININYK----GVSIGNGVI 1730


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
            Y16B4A.2 protein.
          Length = 2105

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 682  YITSDLY-GGEQYFRFFCIPGCLEISVSGQGSFGITISYKRPWSGVFLPNVVV 527
            Y TSD Y  GE Y   + +PG   + V G  S  I I+YK    GV + N V+
Sbjct: 1683 YTTSDFYTTGESYAGVY-LPGLSALLVQGIKSGDININYK----GVSIGNGVI 1730


>U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 467 EKPFGPSKRFRTNVT*RLR*HYHVWQENTGPWTFVRNSYAKRAL 598
           E P  PS+    + + R++ HY V  +  G +T+VRN   +  L
Sbjct: 313 EGPLVPSETSAFHSSNRMQNHYSVNSDINGDYTYVRNDVHRNLL 356


>U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform a protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 467 EKPFGPSKRFRTNVT*RLR*HYHVWQENTGPWTFVRNSYAKRAL 598
           E P  PS+    + + R++ HY V  +  G +T+VRN   +  L
Sbjct: 319 EGPLVPSETSAFHSSNRMQNHYSVNSDINGDYTYVRNDVHRNLL 362


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
            protein Y16B4A.2 protein.
          Length = 2105

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 682  YITSDLY-GGEQYFRFFCIPGCLEISVSGQGSFGITISYKRPWSGVFLPNVVV 527
            Y TSD Y  GE Y   + +PG   + V G  S  I I+YK    GV + N V+
Sbjct: 1683 YTTSDFYTTGESYAGVY-LPGLSALLVQGIKSGDININYK----GVSIGNGVI 1730


>AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance protein
           MIG-13 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 467 EKPFGPSKRFRTNVT*RLR*HYHVWQENTGPWTFVRNSYAKRAL 598
           E P  PS+    + + R++ HY V  +  G +T+VRN   +  L
Sbjct: 319 EGPLVPSETSAFHSSNRMQNHYSVNSDINGDYTYVRNDVHRNLL 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684,919
Number of Sequences: 27780
Number of extensions: 326225
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)