Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e17
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    51   2e-07
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   2.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   2.2  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    27   3.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   3.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.6  
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   8.8  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   8.8  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +2

Query: 575 GAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 685
           G GIG +F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 21  GVGIGLIFSNLISGTSRNPSVRPHLFSMAILGFALTE 57



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +1

Query: 331 LIIGYARNPSLKQQIFSYAILGFALSEAMG 420
           LI G +RNPS++  +FS AILGFAL+EA G
Sbjct: 31  LISGTSRNPSVRPHLFSMAILGFALTEATG 60


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
 Frame = +2

Query: 236 RTLTLLPNSLVL--VQRQWE*LVPVLVLEWFLDA*SLAMHAIPHSSNKYSHMLS-----W 394
           R +  +P+SL+L    R  + + PV+V +W+L   SL    +  SSNK   + S     W
Sbjct: 369 RLVEQVPHSLILSVCSRTGDVIEPVMVPQWYLSVDSLKKEVL-KSSNKLKLVPSLARKEW 427

Query: 395 DLHYLRLWD 421
           D  + ++ D
Sbjct: 428 DSWFKKMGD 436


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 315 SGFWMLNHWLCTQSLTQATNILI 383
           S FW    WLC    T+ T +L+
Sbjct: 608 STFWEFTTWLCKHDATEGTRVLL 630


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 568 SQRSWYWNSLRLPHHRL 618
           +Q+ WY+NS RL  HRL
Sbjct: 77  TQQDWYYNSTRLLVHRL 93


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 624  LA*PMMREPKTVPIPAPL*SSWLILKLHTKSCSIYNKAL 508
            LA  M RE  T+PIP        ++  H   C++Y KAL
Sbjct: 1209 LAEYMEREDHTLPIPIK------VISAHASKCNVYAKAL 1241


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 69  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 182
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 640 LEG-GVPGIADDEGAEDCSNTSSSVIFMVNIKIAHKIMQHIQQSTSII*NI 491
           L+G GV G   D  A D ++      F++  K+A K+ +H+   TS+I N+
Sbjct: 159 LQGNGVGGYLLDM-AHDLADEYQIPCFLMASKMAFKMYEHLGYKTSVIANL 208


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 143 HLQQYPPIHRWYLLSLHSSLQC 208
           HL  Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,313
Number of Sequences: 5004
Number of extensions: 63914
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)