Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1e17
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.56
01_01_0094 - 730484-731570,732030-732715 31 0.98
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 1.7
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 29 4.0
07_03_1191 + 24690936-24691029,24691184-24691377 29 4.0
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 4.0
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 29 5.2
01_02_0048 - 10626467-10627498,10628522-10628617 29 5.2
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 6.9
11_01_0176 - 1403284-1403553,1404313-1404468,1404569-1404787,140... 28 9.2
10_02_0178 + 6241231-6241292,6245238-6245505 28 9.2
08_02_1172 + 24898290-24899141,24900864-24901328 28 9.2
05_07_0361 + 29555446-29556138 28 9.2
02_01_0775 + 5775949-5777385 28 9.2
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 75 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 203
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 31.1 bits (67), Expect = 0.98
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = -1
Query: 595 DCSNTSSSVIFMVNIKIAHKIMQHIQQSTSII*NIHCT*TIKTSKR 458
DC NTSSS ++++N+ + +M++++ S + I + T + K+
Sbjct: 146 DCQNTSSSFVYVLNVAPYYALMENLEPSCGYLAMIPVSWTPASGKK 191
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 75 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 176
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 252 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 82
S +N+++ RCG HC L + L + H + E G GC DQSG
Sbjct: 20 SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 75 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 185
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 77 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 250
+PP PL+P +PSS+ H LQ + L +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 251 LPNS 262
+PN+
Sbjct: 239 MPNA 242
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 548 FNINHEDHRGAGIGTVFGSLIIGYARNPSLKQQ 646
+NI H+ HRG G + L+I + R+ K Q
Sbjct: 734 YNITHDPHRGPICGGMVRELLISFKRSTGQKPQ 766
>01_02_0048 - 10626467-10627498,10628522-10628617
Length = 375
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 389 SWDLHYLRLWDCFVL*LHS*CYL-PFRCFYCLCTVYIL 499
+W LH+ R D L S C L +R FYC C +L
Sbjct: 59 TWPLHHFRRLDGVHCRLCSSCLLLEYRSFYCCCCFLLL 96
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -1
Query: 229 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 83
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>11_01_0176 -
1403284-1403553,1404313-1404468,1404569-1404787,
1405198-1405440,1405539-1405695,1406186-1406226
Length = 361
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 321 NHSNTNTGTSYSHCRCTSTNEFGSRVN-VLSDRCGLEGPHCREL 193
N++ +S +CR +S N+F RV+ +L CG G H + +
Sbjct: 111 NNAKRKGTSSDLNCRISSGNKFIKRVDAILEKHCGTMGCHLQRM 154
>10_02_0178 + 6241231-6241292,6245238-6245505
Length = 109
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = -2
Query: 339 ND*ASKNHSNTNTGTSYS---HCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHL 169
ND S N +N N G S H + V+ + CG E P S+
Sbjct: 41 NDDKSSNKANDNDGGHRSPEDHVKARVKENASIPVDAAAAGCGGEMPESTPTLPRSKRQA 100
Query: 168 CMGGYCCK 145
GG CC+
Sbjct: 101 LRGGRCCR 108
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 77 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 253
LPP + L P H QYPP ++ +H Q PS P R +L L+L
Sbjct: 40 LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99
Query: 254 P 256
P
Sbjct: 100 P 100
>05_07_0361 + 29555446-29556138
Length = 230
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 565 RSQRSWYWNSLRLPHHRLCQEPLPQAAVVLIRHS 666
R Q S + ++ R P HR PLP+AA + R S
Sbjct: 54 RDQASRFCHNCRKPGHRFSDCPLPRAAKAVRRDS 87
>02_01_0775 + 5775949-5777385
Length = 478
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -2
Query: 162 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 46
GG +W Q RV G GC G + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,808,366
Number of Sequences: 37544
Number of extensions: 468793
Number of successful extensions: 1396
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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