Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e17
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    76   3e-14
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    76   3e-14
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    76   3e-14
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   4.7  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 40/73 (54%), Positives = 43/73 (58%)
 Frame = +1

Query: 202 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXXXCLIIGYARNPSLKQQIFS 381
           A R   TT   KDIDSAAK+                       L+IGYARNPSLKQQ+FS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 382 YAILGFALSEAMG 420
           YAILGFALSEAMG
Sbjct: 66  YAILGFALSEAMG 78



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 34/37 (91%), Positives = 36/37 (97%)
 Frame = +2

Query: 575 GAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 685
           GAGIG VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 39  GAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSE 75


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 40/73 (54%), Positives = 43/73 (58%)
 Frame = +1

Query: 202 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXXXCLIIGYARNPSLKQQIFS 381
           A R   TT   KDIDSAAK+                       L+IGYARNPSLKQQ+FS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 382 YAILGFALSEAMG 420
           YAILGFALSEAMG
Sbjct: 66  YAILGFALSEAMG 78



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 34/37 (91%), Positives = 36/37 (97%)
 Frame = +2

Query: 575 GAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 685
           GAGIG VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 39  GAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSE 75


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 40/73 (54%), Positives = 43/73 (58%)
 Frame = +1

Query: 202 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXXXCLIIGYARNPSLKQQIFS 381
           A R   TT   KDIDSAAK+                       L+IGYARNPSLKQQ+FS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 382 YAILGFALSEAMG 420
           YAILGFALSEAMG
Sbjct: 90  YAILGFALSEAMG 102



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 34/37 (91%), Positives = 36/37 (97%)
 Frame = +2

Query: 575 GAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 685
           GAGIG VFG+L+IGYARNPSLKQQLFSYAILGFALSE
Sbjct: 63  GAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSE 99


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = -2

Query: 288 SHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGYCCKWSHQC 130
           SHC  T    +   RV   ++ C    P CR   +LC  SRY   M  YC K    C
Sbjct: 307 SHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACGHC 363


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 129 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 218
           C+    C +     D  CCPY + C A  P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +3

Query: 69  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 194
           N  C     P       +  C+  T C+S +   +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,347,355
Number of Sequences: 27780
Number of extensions: 390228
Number of successful extensions: 1264
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)