Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e14
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    27   2.0  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    27   2.0  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   3.5  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.5  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    26   6.2  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   8.2  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   8.2  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   8.2  

>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = +3

Query: 594 STEKKVLKISQTKYEEI------LKISKKYIFINQVDKSFHEAVDD 713
           S+E ++  IS T  +EI      LK S  Y FI +VDK+  E V D
Sbjct: 2   SSEARMFTISDTTMKEIDRFRLRLKKSVMYAFILKVDKATKEIVPD 47


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 462 FYSMAQDKTKISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQESTEKKVLKIS 623
           F S+++ K KISLY++K        D  L +    +R +  ++ ST+ K L ++
Sbjct: 167 FASVSERKYKISLYNIKSFDARPFQDIPLTFLPPHVR-IANVEFSTDGKYLLLT 219


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 537 DGVLHYYDSEIREVVKLQEST 599
           +G+L++YD++ RE++K   +T
Sbjct: 158 NGILYFYDTQTRELIKFLTNT 178


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/97 (17%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
 Frame = +3

Query: 429  HTKNYDVFEGRFYSMAQDKTK-ISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQESTEK 605
            + +NYD+F+   +SM+  + K  +L ++ E+      +   +Y D      + ++  + +
Sbjct: 1258 NARNYDLFDDSIFSMSFAELKYTALSNIVEMEKLGFANRRNNYQDMVNSIALDIRNKSRR 1317

Query: 606  KVLKISQ--TKYEEILKISKKYIFINQVDKSFHEAVD 710
            ++ +  +    ++ +L + +K  F++   KS++E ++
Sbjct: 1318 RMQRQRELDAGHQSLLNLREKRAFLDSQLKSYNEYIE 1354


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 217 AHHQIRYSLPRRRKVLARL*LPCSILLPFETPENLAAHLRAPR 89
           AH +   ++P  R  LA   +P SI +PF   E  AA + AP+
Sbjct: 187 AHERFLGNVPESRPGLASGHIPTSINIPF--TETTAAGITAPK 227


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 23  RRQIANFENCNLYFS 67
           +R +   ENCNLYF+
Sbjct: 376 QRNVTTMENCNLYFN 390


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -3

Query: 183 EGKYWHDYNYHAVFYYRSKHLKIWQLICAP 94
           E +YW   ++  +   R  H ++W L   P
Sbjct: 641 EVRYWDGKSFDLILKLRGHHSEVWALAVGP 670


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 189 HEEGKYWHDYNYHAVFYYRSKHLK 118
           + EGK++   +YH  F  R KH K
Sbjct: 299 YREGKFYCHLDYHEQFSPRCKHCK 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,381
Number of Sequences: 5004
Number of extensions: 59664
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)