Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1e12
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 34 0.026
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 31 0.14
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 31 0.25
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 1.3
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 28 1.3
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.0
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 3.0
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 26 5.3
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 5.3
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 26 5.3
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 26 7.0
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 7.0
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 7.0
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 26 7.0
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 33.9 bits (74), Expect = 0.026
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +1
Query: 322 EPIQPELDRSTTE--SMPQHTESFVIEQMVTVNSEEEMELKNEQTALESD-NKENSLDCE 492
EP TT S+ Q + M V E E+E KN T E+D N+++ +C+
Sbjct: 303 EPFDTNFPALTTRPLSICQRATDIIERSMNYVFGESELEEKNASTKTENDSNEDDKEECQ 362
Query: 493 -PVPKSAPNSRPQTPK 537
S P S TPK
Sbjct: 363 SSSTSSVPESTASTPK 378
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 31.5 bits (68), Expect = 0.14
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 259 EHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMP--QHTESFVIEQMVTVNSEEEME 432
E + K+E + + + + YI ++ LDR+ T +P + ++ E+ V+ E+E
Sbjct: 334 EVLREKVEKLQALSDEKDFYISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRISELE 393
Query: 433 LKNEQTAL--ESDNKENS 480
EQ + E DN+ S
Sbjct: 394 HTIEQLTINNERDNERMS 411
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 30.7 bits (66), Expect = 0.25
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 274 KIESISDMKVQNECYIEPIQPELDRSTTESMPQH-TESFVIEQMVTVNSEEEMELKNEQT 450
K++++S + Y+ PE TE M Q T++ + Q +++SE+E KN
Sbjct: 238 KLDTLSKSIINIFDYLLSHLPESWSIITEHMAQELTKATYVSQSSSISSEDEEIAKNADV 297
Query: 451 ALESDNKENSLD 486
E DN D
Sbjct: 298 PAEVDNNSTKAD 309
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +1
Query: 256 TEHVTHKIESISDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQM----VTVNSEE 423
T VT + +++ +++ E S+TE+ T S E VTVNS E
Sbjct: 987 TSAVTELPDPNHQLEMSTTTHVQHPNSETIPSSTENQYFDTTSGAFEANSNTEVTVNSNE 1046
Query: 424 EMELKNEQTALESDNKENSLDCEPV 498
+ + TA ESDN ++ L + V
Sbjct: 1047 VSQPFDFDTANESDNDDDELPVQQV 1071
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +1
Query: 250 VITEHVTHKIESISDMKV---QNECYIEPIQPELDRSTTESMPQHT 378
V TE+ + +++ SD K Q +P QP+ ++STT HT
Sbjct: 127 VKTENFANDLDTTSDSKPVVHQTRATRKPAQPKAEKSTTSKSKSHT 172
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 593 HCSSSNRRVDRIHHGDQQRLSGQKRLFKQQLKNHDKVLLS 712
HCSSS R D ++ Q+ Q Q HDK L+S
Sbjct: 51 HCSSSFTRSDVLNRHVNQKHVKQNDAGSQTHPKHDKTLIS 90
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3
Query: 612 RLLEEQWCR--WTT*WSWRLWPTAL*SFRSLWAAIWRRFWY 496
RL E QW R + T + R W + +F +W + FWY
Sbjct: 489 RLPEVQWNRAFYKTYYESRSWFHLITNFNRIWVIHFGMFWY 529
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 250 LFQSSKAPATEEHDLVIVFGST 185
+ + SK P + HD+V+V GST
Sbjct: 322 VLKDSKVPKADVHDIVLVGGST 343
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 349 STTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAP 513
STTE + + +F+IE + V + E+ K + L +D S+D EP P P
Sbjct: 1049 STTELIGKKERTFIIEHYLIVLNTLELLPKEDTWILVTD---MSVDKEPDPNFLP 1100
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 314 VTLNRYSQN*TGQLRNRCHSILSHLLLNKWLR*ILKK 424
++LN S + L H IL HL LNK ++K+
Sbjct: 1 MSLNNLSNSYNQYLAQESHQILRHLFLNKQYSPLVKR 37
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 673 QTTIEKSRQSSPVTQASRLSNTRQLDEIKSTF 768
QTTIEK+R + +A + R L +I ST+
Sbjct: 106 QTTIEKARHLIKLYEAEGIGRERVLIKIASTY 137
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 379 ESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPV-PKSAPNSRP 525
E F +Q +NS E ++ +Q +S K NS+ + V P+ P+ P
Sbjct: 167 EVFDRKQSAEINSPIEKDVNPQQNISDSSIKNNSIHSDEVNPEVRPDLTP 216
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +1
Query: 346 RSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAP 513
R + S + F T+ +E + E ++ QT K NSL+C+ + P
Sbjct: 159 RESCLSTETSSSKFSAVTAATITNETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGP 214
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 412 NSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRPQT 531
+SEEE EL + ALE N + ++ + P SR T
Sbjct: 33 DSEEESELDTNKQALEHINAQKNITHNENKSAEPLSRQST 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.127 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,767
Number of Sequences: 5004
Number of extensions: 60881
Number of successful extensions: 176
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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