Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1e12
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 31 0.78
02_04_0469 - 23178589-23178755,23179529-23179697,23179836-231799... 29 3.2
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 29 3.2
01_05_0686 - 24277812-24277909,24278029-24278081,24278227-242783... 29 4.2
08_02_0823 + 21557111-21557292,21557391-21557473,21557722-215578... 29 5.5
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278... 29 5.5
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 28 7.3
01_05_0482 + 22614097-22614729,22614859-22615182,22615291-226153... 28 7.3
06_03_1186 - 28260487-28262112,28262205-28262345,28262429-282625... 28 9.6
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 28 9.6
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 31.5 bits (68), Expect = 0.78
Identities = 13/53 (24%), Positives = 35/53 (66%)
Frame = +1
Query: 373 HTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRPQT 531
H ESF ++++ +++EE++ +++Q+ ++D+ + + E +P+S + P+T
Sbjct: 254 HKESFPEDKVIAEHADEEVKAEDQQSK-QADDMDAEVLQEEIPESKESDLPET 305
>02_04_0469 -
23178589-23178755,23179529-23179697,23179836-23179919,
23180495-23180647,23180798-23180950,23182488-23182589
Length = 275
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +1
Query: 301 VQNECYIEPIQPELDRSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENS 480
+QNE I+ +Q +D + Q + + + ++ EE + + E LE+ S
Sbjct: 112 IQNEINIDDVQKLMDDTAEAKAYQDEINAALGEQLSAEDEEAVMAEFEN--LEAQLAVES 169
Query: 481 LDCEPVPKSAPNSRPQTP 534
L PV + P + +TP
Sbjct: 170 LPDAPVTEVRPEEKSETP 187
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 473 SLLSDSRAVCSFFNSISSSE---FTVTICSITNDSVCCGIDSVVDRSNSGCIGSM 318
S +S S++ CS +S+ SSE + V++ DS C D +VD + +G +
Sbjct: 436 SCVSSSQSYCSDIHSLDSSELQAYCVSVVEKIKDSFGCTGDLMVDANIGAWVGEL 490
>01_05_0686 -
24277812-24277909,24278029-24278081,24278227-24278309,
24278353-24278401,24278466-24278514,24279455-24280418
Length = 431
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 96 NKIKRSTDPASSDSGVSCTRRPECYESKSIVDPKTITKSCSSVAGAFEDWKSYYGA 263
++ ++++ +S DSG S PEC E + + I SC G W Y A
Sbjct: 94 DQYRKASKESSKDSGASAAAAPECSECQ-----QPIKLSCPLCRGPVSHWTKDYDA 144
>08_02_0823 +
21557111-21557292,21557391-21557473,21557722-21557810,
21557985-21558058,21558264-21558314,21558406-21558482,
21560206-21560900
Length = 416
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +1
Query: 388 VIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRPQTPK 537
+IEQ + + T S + +SL P+P P +P PK
Sbjct: 307 IIEQAAAAAASSSGSSSSSSTDSPSSSSSSSLSPSPLPSPPPQQQPTVPK 356
>08_01_1011 +
10226160-10226676,10226794-10226810,10227677-10227886,
10227921-10228406
Length = 409
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Frame = +3
Query: 162 ECYESK--SIVDPKT-----ITKSCSSVAGAFEDWKSYYGACY 269
EC ++ S VD KT I+++ +V AF WK Y+G CY
Sbjct: 365 ECQKASLPSCVDIKTDNRLLISQTHPAVDAAFVLWKKYFGTCY 407
>02_05_0752 +
31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = +1
Query: 343 DRSTTESMPQHTESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSR 522
D S ++ +H ES E + +E+ E ESD+++ E + KS R
Sbjct: 190 DYSESDEEDEHDESEDEESDIEDEGDEDWTSNGEAKTDESDDEDALKSVEELKKSVDRLR 249
Query: 523 PQTPKTLQ 546
P TL+
Sbjct: 250 KLVPCTLE 257
>01_05_0482 +
22614097-22614729,22614859-22615182,22615291-22615396,
22615628-22615668
Length = 367
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 114 TDPASSDSGVSCTRRPECYESKSIVDPKTITKSCSSVAGA 233
T A D V+ R E E+ ++ P ++T CSSVA A
Sbjct: 57 TASAVEDDAVAPGRGEEGGEASAVGSPCSVTSDCSSVASA 96
>06_03_1186 -
28260487-28262112,28262205-28262345,28262429-28262573,
28262964-28263067,28263324-28263456,28263904-28264013,
28265144-28265167
Length = 760
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 271 HKIESISDMKVQNECYIEPIQPELDRSTTESMPQHTESFVIEQMVTVN-SEEEMELKNEQ 447
HK + + +K Q + + P+ +DR + QH + + V S+ EM+ +N Q
Sbjct: 258 HKNKLEASLKQQKD--VHPVADGIDRLRENTRRQHADKSDGKGHVEKPVSDSEMKRRNIQ 315
Query: 448 TALESDNKENSLDCE 492
++ NK++ CE
Sbjct: 316 KEVQKANKKDVRPCE 330
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +1
Query: 376 TESFVIEQMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPKSAPNSRPQ 528
T+S IEQ++ +S +EME NEQ +K+ S D VP +A R +
Sbjct: 107 TDSSSIEQVIGTSSIQEME-TNEQV----KSKDTSKDMTQVPANAEGIRKE 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.127 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,762,681
Number of Sequences: 37544
Number of extensions: 374456
Number of successful extensions: 857
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -