Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte1e12
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.20 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             27   0.20 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.6  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   9.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 69  NGQHQQSL*NKIKRSTDPASSDSGVSCTRRPECYESKSIVDPKTITK 209
           N Q Q+S  + I R+++   S+S   C RRP  + S +   P+ I+K
Sbjct: 23  NSQSQRSSGSSISRNSN--RSESSGYCGRRPSTFGSSNEALPQPISK 67


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 69  NGQHQQSL*NKIKRSTDPASSDSGVSCTRRPECYESKSIVDPKTITK 209
           N Q Q+S  + I R+++   S+S   C RRP  + S +   P+ I+K
Sbjct: 23  NSQSQRSSGSSISRNSN--RSESSGYCGRRPSTFGSSNEALPQPISK 67


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 397 QMVTVNSEEEMELKNEQTALESDNKENSLDCEPVPK--SAPNSRPQTPKT 540
           QM  + +   M +KNE + +E  +   SL C P     ++P    +TP T
Sbjct: 6   QMKQITNSTTMSVKNEISTVEPVDPVKSLVCSPDLSVFTSPACGSETPLT 55


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 546 RQSATNAKTIKSSNDTIAPPAIVESTEYTTETNNACQAKNAYSNN 680
           R S  N KT+ SS+D +      +S+++  +  N       Y+N+
Sbjct: 45  RSSLRNYKTLISSHDELPGHINCDSSKFEEDLMNKLPTTPEYNNH 89


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 53  KYIKSKWTTPT 85
           KY+  +WTTPT
Sbjct: 438 KYLPERWTTPT 448


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 660 WPDRRCWSPWCIRSTRRLLEEQWCR 586
           W D R   P  + S  RLLE  W +
Sbjct: 92  WKDNRLRLPENMTSEYRLLEVDWLK 116


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 502 KSAPNSRPQTPKTLQ 546
           K  PN +P+TP T Q
Sbjct: 5   KHKPNRKPRTPFTTQ 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.127    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,127
Number of Sequences: 438
Number of extensions: 4156
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)