Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1e10
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 37 0.003
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 35 0.009
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 33 0.027
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 30 0.34
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 29 0.59
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 1.8
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.1
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 26 5.5
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.3
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 7.3
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 9.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.6
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 36.7 bits (81), Expect = 0.003
Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 2/151 (1%)
Frame = +3
Query: 207 SSNVKCLESAGVLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLE 386
+ + + +G + LLS +R+ V A+ +A +L G++ L
Sbjct: 152 TDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQPLLN 211
Query: 387 NLNKY--NVYYKRSALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWA 560
L +V R+A + L + + + A+ + L D ++ +A WA
Sbjct: 212 ILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYSEDVEIIVDACWA 271
Query: 561 VGYIGKHSEQLAGLVVDAGTLPLLVLAFQEP 653
+ Y+ + G ++D G P LV P
Sbjct: 272 ISYLSDGPNEKIGAILDVGCAPRLVELLSSP 302
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +3
Query: 444 VAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVDAGTL 623
++K ++ G ++ V LE ++ AAWA+ I + +VVD+G +
Sbjct: 105 LSKETHPPIDQVIACGVVDRFVQFLESEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAV 164
Query: 624 PLLVLAFQEPE 656
P + PE
Sbjct: 165 PRFIQLLSSPE 175
Score = 32.3 bits (70), Expect = 0.063
Identities = 31/135 (22%), Positives = 56/135 (41%)
Frame = +3
Query: 231 SAGVLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLENLNKYNVY 410
S V L K L S+ I A AI+ L++ + +L+ G +E L+ +V
Sbjct: 247 SVAVPILAKLLYSEDVEIIVD-ACWAISYLSDGPNEKIGAILDVGCAPRLVELLSSPSVN 305
Query: 411 YKRSALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQ 590
+ AL + + + I+ GAL S L +++ A W + I + Q
Sbjct: 306 IQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITAGNTQ 365
Query: 591 LAGLVVDAGTLPLLV 635
++++ +P LV
Sbjct: 366 QIQAIIESNLIPPLV 380
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 35.1 bits (77), Expect = 0.009
Identities = 27/132 (20%), Positives = 58/132 (43%)
Frame = +3
Query: 240 VLELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLENLNKYNVYYKR 419
V+ +L L+ + A+ AI+ L++ + + +++ GI +E L + +
Sbjct: 249 VIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQVQT 308
Query: 420 SALYLLRAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAG 599
AL + + ++ I+ GAL ++S L V++ A W + I +
Sbjct: 309 PALRSVGNIVTGDDVQTQVIINCGALSALLSLLSSPRDGVRKEACWTISNITAGNSSQIQ 368
Query: 600 LVVDAGTLPLLV 635
V++A +P L+
Sbjct: 369 YVIEANIIPPLI 380
Score = 29.9 bits (64), Expect = 0.34
Identities = 32/179 (17%), Positives = 68/179 (37%), Gaps = 2/179 (1%)
Frame = +3
Query: 123 PRNIQLVFETYQKARLVFVQTMAELATRSSN-VKCLESAGVLELLKPLLSDACSTIRQCA 299
PR ++ + + + +A+ SSN + A + + LLS + +R+ A
Sbjct: 124 PRFVEFLSHENNLLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQA 183
Query: 300 VVAIAKLAEHDLDIARQLLNGGIITITLENL-NKYNVYYKRSALYLLRAVAKHNEELASA 476
V A+ +A +L G++ L + + + R++ + L + +
Sbjct: 184 VWALGNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDW 243
Query: 477 IVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVDAGTLPLLVLAFQEP 653
+ + + D V +A WA+ Y+ + + ++DAG LV P
Sbjct: 244 NSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHP 302
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 33.5 bits (73), Expect = 0.027
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 261 LLSDACSTIRQCAVVAIAKLAEHDLDIARQL-LNGGIITITLENLNKYNVYYKRSALYLL 437
LL + I++ A VA+ LA + + A + LNG + + + + +V + +A+ +
Sbjct: 93 LLQSPDAEIQRAASVALGNLAVNAENKALVVKLNG--LDLLIRQMMSPHVEVQCNAVGCI 150
Query: 438 RAVAKHNEELASAIVRLGALEHIVSCLEDFDTQVKENAAWAVGYIGKHSEQLAGLVVDAG 617
+A +E S I GAL + + D +V+ NA A+ + HS + +V AG
Sbjct: 151 TNLATLDEN-KSKIAHSGALGPLTRLAKSKDIRVQRNATGALLNM-THSYENRQQLVSAG 208
Query: 618 TLPLLV 635
T+P+LV
Sbjct: 209 TIPVLV 214
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 29.9 bits (64), Expect = 0.34
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 633 LTRVVCLHLQPNRPIAHCAFQC 568
LT + LH+QP PI C++ C
Sbjct: 827 LTSTIFLHIQPKEPIIFCSWNC 848
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 29.1 bits (62), Expect = 0.59
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 300 VVAIAKLAEHDLDIARQ---LLNGGIITITLENLNKYNVYYKRSALYLLRAVAKHNEELA 470
V + K+ + D+A + + IIT + + + + + ++ + NEE
Sbjct: 537 VPGLKKVIQRAFDVANEEDEMKAANIITDDFDYTSDLTSFLTFAGIPVVNLAFERNEENP 596
Query: 471 SAIVRLGALEHIVSCLEDFDTQVKENAA 554
+ + LG+ E VS ++ F ++ ENAA
Sbjct: 597 TPMPFLGSCEDTVSWIDTFGSEYWENAA 624
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 543 ENAAWAVGYIGKHSEQLAGLVVDAGTLPLLV 635
++A WA+G IGK ++Q +++ T+PL+V
Sbjct: 1098 KSALWAIGNIGK-TDQGITFLINHDTIPLIV 1127
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 38 FLSKRKYCKTFSFDFVEYHLNHEPLNEQSKEYTVSFRNISEGTISFCPN 184
F +Y K F D +Y + + LN+ T++FR+ E F N
Sbjct: 254 FNQPMQYSKQFKLDNPDYEASSDSLNDIENLSTLTFRSDEELEFDFDTN 302
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = +3
Query: 246 ELLKPLLSDACSTIRQCAVVAIAKLAEHDLDIARQLLNGGIITITLENLNKYNVYYKRSA 425
E PLL D S + + V + A H L IA LL + + + + R+
Sbjct: 84 ETFIPLLEDTLSLLEKERPVFSSLAATHRLRIA--LLE---LLKKSGSYKGFEAFVNRTF 138
Query: 426 LYLLRAVAKHNEELASAIVRLGAL 497
LLR V NEE+A ++L L
Sbjct: 139 AVLLRIVVNDNEEMAVLALKLVVL 162
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 405 VYYKRSALYLLRAVAKHNEELASAIVRLGALEHIVSCLE-DFDTQVKENAAWAVGYIGKH 581
++Y A + + + L ++ LG++EH + C + ++ N V +
Sbjct: 309 IFYDIEAYMSVTSSLPSIQSLVLRLIHLGSIEHAIKCFQSSYNASFLVNIVGVVATLSSS 368
Query: 582 SEQ 590
SE+
Sbjct: 369 SEE 371
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = -1
Query: 631 NKGSVPASTTKPANCSLCFPM*-PTA----QAAFSLT*VSKSSRQETMCSKAPRRTIA 473
++ +P++ K + LC P+ PT A S + SR+ + ++PRRTIA
Sbjct: 99 SRSPIPSTRLKENDSRLCSPLASPTGGLKRPAKVSFALANTPSRKGNLVPQSPRRTIA 156
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 387 NLNKYNVYYKRSALYLL 437
N NK+NVY ++++YLL
Sbjct: 46 NTNKHNVYSTKNSMYLL 62
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 322 ASFAIATTAH*RI-VLHASDNKGFNSSKTPALSKHFTLLDLVANS 191
A+ +I++TA + L+A+ N+ + K ALSK LD+ N+
Sbjct: 867 ANLSISSTAQVLLETLYANGNRLSSFPKNEALSKSLRFLDISTNN 911
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -3
Query: 176 KN*SCLLICFEN*LYIPWTAH*VAHDLNDILRNQ 75
+N + +L C + LY W + D+N +LR +
Sbjct: 1439 ENKNYVLFCIHHVLYDAWAFQLIMDDINHLLRKE 1472
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
Frame = +3
Query: 462 ELASAIVRLGALEHI----VSCLEDFDTQVKE 545
ELASA+ +LGAL+ + +S +E+ +Q++E
Sbjct: 1475 ELASAVEKLGALQKLHSESLSLMENIKSQLQE 1506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,075
Number of Sequences: 5004
Number of extensions: 53169
Number of successful extensions: 135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -