Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte1e06
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881... 29 4.7
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 8.3
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 28 8.3
05_06_0063 + 25289117-25290643 28 8.3
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 28 8.3
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 8.3
03_06_0019 - 31078669-31080081 28 8.3
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779... 28 8.3
>11_06_0529 +
24687027-24687064,24687150-24687610,24687709-24688124,
24688688-24688860,24689733-24689868,24689914-24690264,
24691170-24691344,24691761-24691822
Length = 603
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 322 ALIEALLVTFFKGFNFVLCEFVVAQWV 242
AL+ + +V G NF +C+F +A+W+
Sbjct: 320 ALLNSQIVVLVFGLNFQICDFGLAKWL 346
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 364 CRQIWTSETKPKIWSIPKGDIGS 432
C W+ ++ +IW+IP G GS
Sbjct: 283 CMSGWSGDSTARIWTIPDGPCGS 305
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 198 SLAPATHVLPSETSHTHCATTNSHKTKLKPLKNVTRRAS 314
S P + PS+T H A T K L+ TRRAS
Sbjct: 340 SSTPRIRLEPSKTFHARAAETPPSKCSLERASQPTRRAS 378
>05_06_0063 + 25289117-25290643
Length = 508
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 228 SETSHTHC-ATTNSHKTKLKPLKNVTRRASINA 323
S++S C AT +S + + +PL ++TR AS+NA
Sbjct: 349 SDSSVASCPATLSSEERRQRPLGSLTRPASLNA 381
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 630 PGPASEYISLVVAPYIEGVCTGIEVPPIFPFF 535
PGP +YI+ AP +E G +VP I P F
Sbjct: 297 PGPQDQYINQAHAPVLENQYAG-QVPRIAPGF 327
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 383 LKPNPRFGPFPKVTLAVVVGYFLGKLSY 466
+KPN +FGPFP+ +AV + L L Y
Sbjct: 123 IKPN-KFGPFPESLVAVYIAQVLEGLVY 149
>03_06_0019 - 31078669-31080081
Length = 470
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = -1
Query: 692 IRSVSXPR*RQVGWCPSR--VSYLDQHQNIYHW*WLRTLKGSVLALKSLQSFHSSDLLVS 519
+R + PR R VGWCP R +++ + H W ++G + L + +D ++
Sbjct: 327 LRRRAAPRGRVVGWCPQRRVLAHASTACFVSHCGWNSVVEGVSNGVPFLCWPYFADQFLN 386
Query: 518 ALYSCRAMPSASQHMPAGMTTSP 450
Y C + + T+P
Sbjct: 387 QSYICDVWRTGLRMAAPAPATAP 409
>03_02_0359 -
7788382-7788522,7788931-7789837,7791227-7791337,
7791437-7791507,7791582-7791659,7792564-7792770,
7792867-7793046,7793249-7793471,7794133-7794453,
7794538-7795109
Length = 936
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 451 QEVANHYCQCHLWEWTKSWVWFQMSIFDGSVC*RSE 344
Q NH EWT +W FQ S+FD C R +
Sbjct: 271 QNRRNHLILPKALEWTLNWCIFQ-SMFDSKFCVRKD 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,837,608
Number of Sequences: 37544
Number of extensions: 437027
Number of successful extensions: 1328
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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